jerryji1993 / DNABERTLinks
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
☆701Updated 3 months ago
Alternatives and similar repositories for DNABERT
Users that are interested in DNABERT are comparing it to the libraries listed below
Sorting:
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆421Updated last month
- Foundation Models for Genomics & Transcriptomics☆706Updated 2 months ago
- ☆555Updated 6 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,257Updated 4 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆531Updated 3 months ago
- Get protein embeddings from protein sequences☆498Updated 2 years ago
- Genomic Pre-trained Network☆292Updated last week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆452Updated 4 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆719Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆309Updated 4 months ago
- ☆590Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,074Updated last month
- Remote protein homology detection suite.☆594Updated last month
- Benchmarks for classification of genomic sequences☆158Updated last month
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆720Updated 5 months ago
- ☆324Updated last year
- The ViennaRNA Package☆362Updated 2 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,834Updated last week
- ☆808Updated 5 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆272Updated this week
- ☆1,329Updated last month
- Deep functional residue identification☆332Updated 2 years ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆115Updated 8 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- A deep learning-based tool to identify splice variants☆463Updated 2 months ago
- Automatically exported from code.google.com/p/cdhit☆698Updated 2 years ago
- ☆328Updated 4 months ago
- Python library to handle Gene Ontology (GO) terms☆861Updated 3 weeks ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆293Updated 8 months ago
- AlphaFold2 non-docker setup☆365Updated last year