Zymrael / savannaView external linksLinks
Pretraining infrastructure for multi-hybrid AI model architectures
☆200Jul 16, 2025Updated 7 months ago
Alternatives and similar repositories for savanna
Users that are interested in savanna are comparing it to the libraries listed below
Sorting:
- Inference and numerics for multi-hybrid AI model architectures☆92Dec 16, 2025Updated 2 months ago
- Genome modeling and design across all domains of life☆3,318Sep 17, 2025Updated 5 months ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆410Mar 7, 2024Updated last year
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆47Jun 4, 2025Updated 8 months ago
- Biological foundation modeling from molecular to genome scale☆1,477Nov 19, 2025Updated 2 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆758Apr 22, 2025Updated 9 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆225Jun 17, 2025Updated 8 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆459Jan 1, 2026Updated last month
- ☆74Oct 19, 2024Updated last year
- Efficient PScan implementation in PyTorch☆17Jan 2, 2024Updated 2 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆20Feb 19, 2022Updated 3 years ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 3 years ago
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆659Updated this week
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆463Dec 22, 2025Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- This repository provides open-source code for sparse continuous distributions and corresponding Fenchel-Young losses.☆16May 10, 2023Updated 2 years ago
- Foundation Models for Genomics & Transcriptomics☆821Jan 15, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆514Feb 6, 2026Updated last week
- A MAD laboratory to improve AI architecture designs 🧪☆138Dec 17, 2024Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆87Dec 10, 2025Updated 2 months ago
- ☆10Feb 2, 2026Updated 2 weeks ago
- Pretraining Code for METAGENE-1☆68Jan 6, 2025Updated last year
- Gene Regulatory Graph Neural Networks☆36Jun 21, 2022Updated 3 years ago
- RNA-seq prediction with deep convolutional neural networks.☆225Aug 28, 2025Updated 5 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆14Jan 15, 2026Updated last month
- ☆42Updated this week
- Benchmarks for classification of genomic sequences☆172Aug 14, 2025Updated 6 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- RADLADS training code☆37May 7, 2025Updated 9 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆185Feb 10, 2026Updated last week
- The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.☆355Feb 4, 2026Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,163Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ☆16Oct 3, 2025Updated 4 months ago
- An intuitive platform for deploying the latest discoveries in healthcare AI to everybody's phones. Powered by PyTorch!☆10Aug 25, 2020Updated 5 years ago
- ☆11Oct 11, 2023Updated 2 years ago