Zymrael / savannaLinks
Pretraining infrastructure for multi-hybrid AI model architectures
☆169Updated last month
Alternatives and similar repositories for savanna
Users that are interested in savanna are comparing it to the libraries listed below
Sorting:
- Inference and numerics for multi-hybrid AI model architectures☆65Updated 3 weeks ago
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model☆212Updated last week
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆181Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆120Updated 7 months ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆380Updated last year
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆129Updated 10 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆66Updated 5 months ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆91Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆264Updated 2 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆160Updated 2 weeks ago
- Biomni: a general-purpose biomedical AI agent☆269Updated 3 weeks ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆191Updated last week
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆165Updated 3 weeks ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆73Updated last month
- Repository for mRNA Paper and CodonBERT publication.☆130Updated last year
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆166Updated last month
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆103Updated 4 months ago
- ☆109Updated last month
- Benchmarks for classification of genomic sequences☆147Updated 3 months ago
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆443Updated this week
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆128Updated last week
- Foundation Models for Genomics & Transcriptomics☆640Updated last week
- An aviary-based data science agent based on jupyter notebooks☆33Updated 2 weeks ago
- Genomic Pre-trained Network☆270Updated 2 months ago
- RiboNucleic Acid (RNA) Language Model☆109Updated 3 weeks ago
- Benchmark for LLM-based Agents in Computational Biology☆44Updated 2 weeks ago
- The Family of Diffusion Protein Language Models (DPLM)☆194Updated 3 weeks ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆230Updated 3 weeks ago
- ☆266Updated last year
- A short course on proteins and protein design aimed at early career students☆155Updated 11 months ago