Pretraining infrastructure for multi-hybrid AI model architectures
☆242Feb 20, 2026Updated 4 months ago
Alternatives and similar repositories for savanna
Users that are interested in savanna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inference and numerics for multi-hybrid AI model architectures☆107Jun 16, 2026Updated 3 weeks ago
- Genome modeling and design across all domains of life☆3,975Jun 19, 2026Updated 3 weeks ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆434Mar 7, 2024Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,527Mar 20, 2026Updated 3 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆54Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆793Apr 22, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆501Jan 1, 2026Updated 6 months ago
- ☆76Oct 19, 2024Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆246Mar 18, 2026Updated 3 months ago
- BioNeMo Recipes: For building and adapting AI models in drug discovery at scale☆819Updated this week
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆486Updated this week
- Efficient PScan implementation in PyTorch☆17Jan 2, 2024Updated 2 years ago
- This repository provides open-source code for sparse continuous distributions and corresponding Fenchel-Young losses.☆15May 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Feb 14, 2025Updated last year
- Foundation Models for Genomics & Transcriptomics☆890Feb 24, 2026Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Interactive tutorials for using scikit-bio in biological research☆72Feb 20, 2026Updated 4 months ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 4 years ago
- Benchmarks for classification of genomic sequences☆178Aug 14, 2025Updated 10 months ago
- RNA-seq prediction with deep convolutional neural networks.☆248Aug 28, 2025Updated 10 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆21Jun 22, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Source codes and examples for DeepPrime☆14Dec 17, 2024Updated last year
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆398May 28, 2026Updated last month
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆17May 23, 2025Updated last year
- A high efficiency binary format for sequencing data☆103Updated this week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆609Jun 29, 2026Updated last week
- A MAD laboratory to improve AI architecture designs 🧪☆145Dec 17, 2024Updated last year
- ☆63May 13, 2026Updated last month
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- UltimaGenomics repository for workflows compatible with AWS HealthOmics☆30Jun 30, 2026Updated last week
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆126Dec 10, 2025Updated 6 months ago
- ☆51Mar 22, 2026Updated 3 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆250Apr 24, 2026Updated 2 months ago
- ☆14Mar 2, 2023Updated 3 years ago
- Pretraining Code for METAGENE-1☆73Jan 6, 2025Updated last year
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆568Jun 26, 2026Updated last week