Pretraining infrastructure for multi-hybrid AI model architectures
☆232Feb 20, 2026Updated 2 months ago
Alternatives and similar repositories for savanna
Users that are interested in savanna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inference and numerics for multi-hybrid AI model architectures☆103Mar 3, 2026Updated 2 months ago
- Genome modeling and design across all domains of life☆3,874Mar 20, 2026Updated last month
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆430Mar 7, 2024Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,505Mar 20, 2026Updated last month
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆53Apr 9, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆782Apr 22, 2025Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆481Jan 1, 2026Updated 4 months ago
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆738Updated this week
- ☆76Oct 19, 2024Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆234Mar 18, 2026Updated last month
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆478Updated this week
- Efficient PScan implementation in PyTorch☆17Jan 2, 2024Updated 2 years ago
- This repository provides open-source code for sparse continuous distributions and corresponding Fenchel-Young losses.☆15May 10, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16Feb 14, 2025Updated last year
- Foundation Models for Genomics & Transcriptomics☆862Feb 24, 2026Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Interactive tutorials for using scikit-bio in biological research☆67Feb 20, 2026Updated 2 months ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 3 years ago
- RNA-seq prediction with deep convolutional neural networks.☆237Aug 28, 2025Updated 8 months ago
- Benchmarks for classification of genomic sequences☆174Aug 14, 2025Updated 8 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆19Jun 22, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Source codes and examples for DeepPrime☆14Dec 17, 2024Updated last year
- Automated Machine Learning for Environmental Data-Driven Genome Prediction☆14Sep 12, 2025Updated 7 months ago
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆389Mar 27, 2026Updated last month
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆17May 23, 2025Updated 11 months ago
- ☆59Nov 7, 2025Updated 6 months ago
- UltimaGenomics repository for workflows compatible with AWS HealthOmics☆29Updated this week
- A high efficiency binary format for sequencing data☆101Feb 25, 2026Updated 2 months ago
- A MAD laboratory to improve AI architecture designs 🧪☆142Dec 17, 2024Updated last year
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆95Nov 13, 2025Updated 5 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆201Apr 24, 2026Updated 2 weeks ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆112Dec 10, 2025Updated 4 months ago
- ☆50Mar 22, 2026Updated last month
- ☆14Mar 2, 2023Updated 3 years ago