Graph-based alignment (Hierarchical Graph FM index)
☆17Jul 23, 2019Updated 7 years ago
Alternatives and similar repositories for hisat2
Users that are interested in hisat2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene orthologs for model organisms in a tidy data format☆16Sep 29, 2022Updated 4 years ago
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated 3 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- ☆54Aug 1, 2024Updated 2 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆34Feb 18, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 9 months ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 10 months ago
- Phylogenetic tools for Eco-phylogenetics☆16Oct 10, 2024Updated 2 years ago
- Scripts to design DropSynth oligos☆16Dec 2, 2020Updated 5 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Virus Protein Structural Analysis Toolkit☆15Sep 9, 2024Updated 2 years ago
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year
- ☆17Oct 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a hidden Markov model to infer simple repeats from genome sequences☆39Feb 19, 2021Updated 5 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Updated this week
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 7 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Jul 17, 2026Updated 3 months ago
- Single cell somatic genotyper☆10Sep 28, 2022Updated 4 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- 🍓 A simple and fully functional Hexo theme, improved based on Hexo theme quiet.☆12Nov 19, 2024Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genomic Islands From Roary Pangenomes☆10Jul 16, 2021Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆31Jul 13, 2021Updated 5 years ago
- ☆25Apr 13, 2026Updated 6 months ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆26Oct 19, 2026Updated last week
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- ☆10Jul 6, 2024Updated 2 years ago
- Classifier for metagenomic sequences☆29Nov 12, 2018Updated 7 years ago
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 8 years ago
- LongSom tool for long-reads☆13May 20, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 6 months ago
- A false-positive filter for variants called from massively parallel sequencing☆29May 30, 2017Updated 9 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- ☆19Jul 21, 2026Updated 3 months ago
- ☆35Jun 26, 2025Updated last year
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 6 years ago