Graph-based alignment (Hierarchical Graph FM index)
☆17Jul 23, 2019Updated 7 years ago
Alternatives and similar repositories for hisat2
Users that are interested in hisat2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated 3 weeks ago
- Bowtie2's manual in Chinese - Bowtie2中文使用手册☆12Nov 25, 2015Updated 10 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆32Feb 18, 2022Updated 4 years ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 6 months ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- Scripts to design DropSynth oligos☆16Dec 2, 2020Updated 5 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- ☆16Oct 1, 2024Updated last year
- ☆19Jul 21, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Apr 21, 2023Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Jul 17, 2026Updated 3 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 10 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 4 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 5 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- ☆24Apr 13, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scripts for analyses and figures for SNP STR Imputation manuscript