imsb-uke / scGANLinks
Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
☆84Updated last year
Alternatives and similar repositories for scGAN
Users that are interested in scGAN are comparing it to the libraries listed below
Sorting:
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 6 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆133Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 5 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 7 months ago
- ☆91Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆89Updated last week
- ☆80Updated 11 months ago
- Deep Embedding for Single-cell Clustering☆87Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆100Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 4 months ago
- ☆29Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Tutorial for using the perturbseq library to load and manipulate experiments☆21Updated 5 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆93Updated 11 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆62Updated last week
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 6 years ago
- Batch balanced KNN☆165Updated last year
- covolutional neural network based coexpression analysis☆78Updated 5 years ago
- Scanpy use cases.☆85Updated 4 years ago
- Multi-omic velocity inference☆110Updated 8 months ago
- Tabula Muris Senis☆103Updated 2 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆80Updated 8 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆100Updated 4 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆170Updated this week