cantinilab / stories
Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein
☆12Updated 8 months ago
Alternatives and similar repositories for stories:
Users that are interested in stories are comparing it to the libraries listed below
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated last month
- Global Waddington-OT☆23Updated 3 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last week
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- ☆24Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆12Updated 10 months ago
- ☆10Updated 3 months ago
- ☆10Updated last year
- ☆60Updated last year
- ☆45Updated 4 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆19Updated 6 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆11Updated last month
- Test genes for Spatial Variation☆14Updated 4 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- ☆47Updated 2 weeks ago
- ☆16Updated 2 years ago
- single cell foundation model for Gene network inference and more☆16Updated 7 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- A novel method for single-cell diagonal integration: scConfluence☆19Updated 9 months ago
- ☆21Updated 2 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 4 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Updated last month
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- ☆16Updated 9 months ago
- Invariant Representation learning☆15Updated 9 months ago
- Multi-omic single-cell optimal transport tools☆151Updated this week