Alternatives and similar repositories for proteinfold

Users that are interested in proteinfold are comparing it to the libraries listed below

• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 10 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆168Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆98Updated last month
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last week
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆93Updated last month
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated last month
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆213Updated 4 months ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆180Updated this week
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆198Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated this week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆49Updated 2 weeks ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆151Updated 3 weeks ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 2 months ago
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 3 weeks ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆94Updated last year
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆31Updated 2 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 2 weeks ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆55Updated 8 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆42Updated this week
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 5 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆132Updated last year
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated last year
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆76Updated this week