althonos / mini3di
A NumPy port of the foldseek code for encoding protein structures to 3di.
☆22Updated this week
Related projects: ⓘ
- Automatic oligonucleotide design for PCR-based gene synthesis☆34Updated 5 years ago
- Convert PDB residues to their Uniprot equivalents☆14Updated 4 years ago
- Cross-protein transfer learning for variant effect prediction☆17Updated last year
- ☆20Updated last month
- 🧬 - Data management and modeling framework based on EnzymeML.☆21Updated last week
- dom2vec: Protein domain embeddings☆5Updated 3 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆13Updated 6 months ago
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆15Updated last year
- All the fun and adventure of MHC naming, now in Python☆9Updated last year
- Examples for gget (https://github.com/pachterlab/gget).☆26Updated 6 months ago
- 📖 mmCIF support for hybrid/integrative models☆21Updated last month
- Python package for handling IHM mmCIF and BinaryCIF files☆14Updated this week
- An easy-to-use way for running Galaxy workflows.☆20Updated 4 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆29Updated 3 weeks ago
- genetic distance plotting for recombination events analysis☆10Updated 8 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆118Updated last week
- ☆10Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆11Updated last year
- ☆17Updated 2 years ago
- Torrent Mapping Alignment Program☆19Updated 11 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆31Updated 5 years ago
- DNA kmer operations for nim☆14Updated 2 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16Updated 4 years ago
- An automated workflow for processing ddRADseq data using Stacks v2.4. Starts with sequencer files, and ends with various input files for …☆9Updated 4 months ago
- use the noise☆15Updated 4 years ago
- Code to read DNA sequence files in the UCSC Genome Browser 2bit format☆7Updated 6 years ago
- C++ Implementations of Suffix Array Constructions Algorithms for SA-IS and Skew as well as Kasai's algorithm for LCP construction.☆15Updated 3 years ago
- fast easy interval overlapping for nim-lang☆26Updated 2 years ago
- A string library☆76Updated 2 years ago
- Chatbot using AIML for android☆11Updated 5 years ago