Arcadia-Science / ProteinCartography
a pipeline to build similarity maps of protein space
☆31Updated 2 months ago
Alternatives and similar repositories for ProteinCartography:
Users that are interested in ProteinCartography are comparing it to the libraries listed below
- snakemake pipeline for creating trees from sequence sets☆74Updated last month
- Python framework for doing ancestral sequence reconstruction☆37Updated 7 months ago
- Protein 3D structure prediction pipeline☆70Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆117Updated 3 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 3 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆55Updated 4 years ago
- Discovery of conserved gene clusters in multiple genomes☆62Updated 3 weeks ago
- UniProt Id Mapping through API☆31Updated 5 months ago
- Code for LazyAF pipeline☆21Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆100Updated 6 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆157Updated 2 weeks ago
- Python Implementation of Codon Adaption Index☆36Updated 2 years ago
- MMseqs2 app to run on your workstation or servers☆71Updated last week
- Transmembrane proteins predicted through Language Model embeddings☆33Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆70Updated 3 weeks ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- Evolutionary velocity with protein language models☆86Updated last year
- Software for predicting translation initiation rates in bacteria☆22Updated 3 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated 11 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆37Updated this week
- ☆32Updated 5 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆34Updated 6 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 2 weeks ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆30Updated this week
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆99Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆40Updated 5 years ago
- sensitive and precise assembly of short sequencing reads☆152Updated 4 months ago