Alternatives and similar repositories for ProteinCartography:

Users that are interested in ProteinCartography are comparing it to the libraries listed below

• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆124Updated 4 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆76Updated last month
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 3 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆79Updated 2 weeks ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 9 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆104Updated 7 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆77Updated this week
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 6 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆22Updated 5 months ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆27Updated last month
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆163Updated last week
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆55Updated 4 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated this week
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 10 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• ntranoslab / esm-variants
  ☆73Updated last year
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆84Updated last year
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated 2 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 6 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆31Updated last week
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆21Updated 2 years ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆35Updated 5 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆35Updated 7 months ago