Alternatives and similar repositories for ProteinCartography

Users that are interested in ProteinCartography are comparing it to the libraries listed below

• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 10 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆93Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆90Updated 2 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆168Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last week
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆98Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated this week
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆62Updated 5 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆84Updated 8 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 2 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆42Updated 4 months ago
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆55Updated 8 months ago
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆49Updated 2 weeks ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 2 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆57Updated 7 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆198Updated last month
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆31Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• cansyl / ECPred
  ☆17Updated 3 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆76Updated 2 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆151Updated 3 weeks ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆37Updated 2 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 2 weeks ago