akiyamalab / MEGADOCKLinks
An ultra-high-performance protein-protein docking for heterogeneous supercomputers
☆70Updated 2 years ago
Alternatives and similar repositories for MEGADOCK
Users that are interested in MEGADOCK are comparing it to the libraries listed below
Sorting:
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated 2 weeks ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆64Updated 4 months ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆82Updated 9 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆117Updated last year
- Set of useful HADDOCK utility scripts☆56Updated 2 months ago
- Toolkit for alphafold3 input and output files☆94Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 3 months ago
- ☆54Updated 3 months ago
- ☆75Updated last year
- ☆31Updated 3 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆165Updated 7 months ago
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 3 years ago
- Predict the binding affinity of protein-protein complexes from structural data☆158Updated 2 months ago
- Code for ColabDock paper☆149Updated 7 months ago
- ☆33Updated last year
- ☆85Updated 3 weeks ago
- Protein folding in Pymol☆127Updated 2 weeks ago
- AlphaFold-initiated replica exchange protein docking☆85Updated 6 months ago
- Analysis of alphafold and colabfold results☆32Updated last week
- Direct coupling analysis software for protein and RNA sequences☆53Updated 4 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆102Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆107Updated 4 months ago
- Learning the language of protein-protein interactions☆104Updated 2 months ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆124Updated 2 years ago
- ☆51Updated 5 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆179Updated this week
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ☆88Updated last year