akiyamalab / MEGADOCK

Related projects ⓘ

Alternatives and complementary repositories for MEGADOCK

• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆48Updated 2 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆78Updated 7 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆51Updated this week
• haddocking / haddock3
  Official repo of the modular BioExcel version of HADDOCK
  ☆112Updated this week
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 2 years ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆30Updated 5 years ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆28Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆35Updated last year
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆110Updated last month
• Kortemme-Lab / flex_ddG_tutorial
  ☆84Updated 2 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆45Updated 5 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆99Updated last year
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆73Updated 5 months ago
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆60Updated 2 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆48Updated 3 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆30Updated 2 years ago
• lcbc-epfl / metal-site-prediction
  ☆35Updated 10 months ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆59Updated last month
• JoaoRodrigues / pdb-tools
  Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.
  ☆25Updated 2 years ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆51Updated 3 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆45Updated 3 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆135Updated 2 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆32Updated 11 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆109Updated last week
• dina-lab3D / CombFold
  ☆74Updated last month
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆71Updated 3 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆47Updated last year
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆53Updated last month
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆90Updated last year