Alternatives and similar repositories for MetagenomicAntibioticResistance

Users that are interested in MetagenomicAntibioticResistance are comparing it to the libraries listed below

• NCBI-Hackathons / GeneExpressionAging

  View on GitHub
  Gene expression viewer template
  ☆11Aug 30, 2017Updated 8 years ago
• jnalanko / syotti

  View on GitHub
  Minimum Bait Cover Toolkit Syotti.
  ☆13Jan 22, 2025Updated last year
• nextflow-io / rmghc-2018

  View on GitHub
  Nextflow Workshop at Rocky Mountain Genomics HackCon 2018
  ☆10Jun 19, 2018Updated 7 years ago
• peterjc / thapbi-pict

  View on GitHub
  Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool
  ☆10Feb 2, 2026Updated 2 weeks ago
• cbligaard / DeepTM

  View on GitHub
  DeepTM: A deep learning setup for prediction of transmembrane proteins
  ☆14Jan 2, 2018Updated 8 years ago
• NCBI-Hackathons / PrecisionMedicineToolkit

  View on GitHub
  Search public databases for given genotypic information
  ☆11Mar 21, 2018Updated 7 years ago
• PawanRamaMali / Resume-Shortlisting-and-Ranking-Tool

  View on GitHub
  Resume Shortlisting And Ranking Tool - RSART
  ☆17Jul 13, 2025Updated 7 months ago
• ErasmusMC-Bioinformatics / WeFaceNano

  View on GitHub
  Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
  ☆13Apr 20, 2021Updated 4 years ago
• jsychong / MetaboAnalystR

  View on GitHub
  ☆10Oct 17, 2019Updated 6 years ago
• apredeus / 10k_genomes

  View on GitHub
  Various scripts for efficient processing of 10k Salmonella genomes
  ☆16Sep 16, 2021Updated 4 years ago
• isb-cgc / examples-R

  View on GitHub
  Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
  ☆31Nov 27, 2017Updated 8 years ago
• NCBI-Hackathons / GoodDoc

  View on GitHub
  A Template for Clear and Simple Documentation of Bioinformatics Code
  ☆16Jan 24, 2018Updated 8 years ago
• lh3 / fermi2

  View on GitHub
  ☆25May 21, 2021Updated 4 years ago
• kassambara / r2excel

  View on GitHub
  Read, write and format Excel files using R
  ☆15Sep 29, 2025Updated 4 months ago
• xiaosaiyao / epiregulon

  View on GitHub
  inference of transcription factor activity at the single cell level
  ☆23Dec 16, 2025Updated 2 months ago
• andrewjpage / tiptoft

  View on GitHub
  Predict plasmids from uncorrected long read data
  ☆41Oct 31, 2025Updated 3 months ago
• FischerJo / FAME

  View on GitHub
  ☆14May 12, 2023Updated 2 years ago
• hivdb / sierra

  View on GitHub
  HIVDB Genotypic Resistance Interpretation Program
  ☆21Jan 18, 2026Updated 3 weeks ago
• lh3 / nasw

  View on GitHub
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Sep 30, 2024Updated last year
• McMahonLab / TaxAss

  View on GitHub
  16S taxonomy assignment using an ecosystem-specific database.
  ☆17Feb 13, 2023Updated 3 years ago
• sunbeam-labs / sunbeam

  View on GitHub
  A robust, extensible metagenomics pipeline
  ☆174Feb 9, 2026Updated last week
• crazyhottommy / scCustomize

  View on GitHub
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Dec 8, 2021Updated 4 years ago
• edawson / rkmh

  View on GitHub
  Classify sequencing reads using MinHash.
  ☆48Apr 6, 2020Updated 5 years ago
• oxli-bio / oxli

  View on GitHub
  k-mers and the like
  ☆22Feb 9, 2026Updated last week
• dohlee / snakemake-wrappers

  View on GitHub
  Snakemake wrappers for bioinformatics.
  ☆18Feb 8, 2023Updated 3 years ago
• arendsee / rhmmer

  View on GitHub
  Simple R utilities for working with HMMER
  ☆19Oct 3, 2024Updated last year
• molpopgen / BigDataFormats

  View on GitHub
  Tutorial on programming or "big data"/bioinformatics
  ☆32Jan 5, 2018Updated 8 years ago
• msberends / AMR

  View on GitHub
  Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial propertie…
  ☆105Updated this week
• NCBI-Hackathons / ViruSpy

  View on GitHub
  A pipeline for viral identification from metagenomic samples
  ☆28Oct 15, 2017Updated 8 years ago
• ExpressionAnalysis / ea-utils

  View on GitHub
  Automatically exported from code.google.com/p/ea-utils
  ☆96Jun 8, 2023Updated 2 years ago
• meglab-metagenomics / amrplusplus_v2

  View on GitHub
  MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…
  ☆26Nov 14, 2022Updated 3 years ago
• R-D-BioTech-Alaska / Qelm

  View on GitHub
  Qelm - Quantum Enhanced Language Model
  ☆25Updated this week
• datacarpentry / organization-genomics

  View on GitHub
  Project Organization and Management for Genomics
  ☆25Feb 10, 2026Updated last week
• IndexThePlanet / LoganSearch

  View on GitHub
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆36Oct 29, 2024Updated last year
• Morteza-M-Saber / BacGWASim

  View on GitHub
  A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
  ☆22Jul 21, 2021Updated 4 years ago
• ricardoamferreira / Predicting-Adverse-Drug-Reactions-with-Machine-Learning

  View on GitHub
  The objective of this work is to develop machine learning (ML) methods that can accurately predict adverse drug reactions (ADRs) using th…
  ☆27Oct 25, 2023Updated 2 years ago
• zjshi / Maast

  View on GitHub
  Microbial agile accurate SNP Typer
  ☆30Dec 27, 2023Updated 2 years ago
• ncbi / amr

  View on GitHub
  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…
  ☆350Jan 31, 2026Updated 2 weeks ago
• nmquijada / tormes

  View on GitHub
  Making whole bacterial genome sequencing data analysis easy
  ☆114Apr 22, 2025Updated 9 months ago