NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
☆24Dec 6, 2018Updated 7 years ago
Alternatives and similar repositories for MetagenomicAntibioticResistance
Users that are interested in MetagenomicAntibioticResistance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- A pipeline for viral identification from metagenomic samples☆27Oct 15, 2017Updated 8 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- Nextflow Workshop at Rocky Mountain Genomics HackCon 2018☆10Jun 19, 2018Updated 7 years ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆15Jan 2, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Apr 7, 2026Updated last week
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- ☆14May 12, 2023Updated 2 years ago
- Read, write and format Excel files using R☆15Sep 29, 2025Updated 6 months ago
- A robust, extensible metagenomics pipeline☆175Apr 10, 2026Updated last week
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago
- Web app for Malaria detection from the human blood sample images which is trained on National Library of Medicine dataset using Flask and…☆13Oct 3, 2023Updated 2 years ago
- Search public databases for given genotypic information☆12Mar 21, 2018Updated 8 years ago
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated last month
- inference of transcription factor activity at the single cell level☆24Dec 16, 2025Updated 4 months ago
- MIRROR - beta diversity of species interaction networks☆15Mar 26, 2016Updated 10 years ago
- ☆23Mar 12, 2026Updated last month
- Project Organization and Management for Genomics☆26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Course Materials for the MMCi Practical Data Science Course☆19Apr 10, 2020Updated 6 years ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago
- k-mers and the like☆22Apr 6, 2026Updated last week
- ☆12Dec 13, 2022Updated 3 years ago
- ☆25May 21, 2021Updated 4 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- BioData Club website and project management☆10Jul 28, 2021Updated 4 years ago
- ☆12Oct 3, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Workshop 10 - Advanced multivariate analyses☆11Sep 3, 2024Updated last year
- WhatsGNU: a tool for identifying proteomic novelty☆15Jan 27, 2025Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆375Feb 9, 2026Updated 2 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Automatically exported from code.google.com/p/ea-utils☆97Jun 8, 2023Updated 2 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆12Feb 20, 2026Updated last month
- Bash script for promoter sequences extraction☆16Aug 7, 2018Updated 7 years ago