Retrieve data in genomic intervals with a Python interface for tabix.
☆83Aug 10, 2017Updated 9 years ago
Alternatives and similar repositories for pytabix
Users that are interested in pytabix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 10 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆18May 10, 2026Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- ☆21Dec 26, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- SEEKIN: SEquence-based Estimation of KINship☆15Oct 11, 2017Updated 8 years ago
- BigWig and BAM utilities☆104Updated this week
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- https://bam.iobio.io☆47Aug 26, 2026Updated 3 weeks ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- ☆15Jun 3, 2022Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆26Sep 1, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆139Apr 27, 2026Updated 4 months ago
- ☆22Feb 5, 2025Updated last year
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Structural Variant Index☆76Jul 1, 2026Updated 2 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- Server component for HiGlass that manages and serves tiled data☆22May 23, 2023Updated 3 years ago