higlass / higlass-dockerLinks
Builds a docker container wrapping higlass-server and higlass-client in nginx
☆31Updated 3 years ago
Alternatives and similar repositories for higlass-docker
Users that are interested in higlass-docker are comparing it to the libraries listed below
Sorting:
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆119Updated last month
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- ☆53Updated 3 years ago
- Docker for 4DN Hi-C processing pipeline☆60Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- Genome-wide contact analysis using sklearn☆71Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆76Updated 4 months ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 months ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆91Updated 10 months ago
- ☆29Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 7 months ago
- ☆72Updated 2 years ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 7 months ago
- A modular Hi-C mapping pipeline☆100Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Module for embedding igv.js in an IPython notebook☆80Updated 10 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- ☆23Updated 5 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆78Updated 10 months ago
- ☆13Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated last week