Builds a docker container wrapping higlass-server and higlass-client in nginx
☆32May 31, 2022Updated 3 years ago
Alternatives and similar repositories for higlass-docker
Users that are interested in higlass-docker are comparing it to the libraries listed below
Sorting:
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated this week
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 2 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 2 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Mar 13, 2026Updated last week
- Fast, flexible and extensible genome browser.☆339Updated this week
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- Lightweight converter between hic and cool contact matrices.☆75Jul 15, 2024Updated last year
- A cool place to store your Hi-C☆231Updated this week
- The tools for your .cool's☆161Jul 7, 2025Updated 8 months ago
- A modular Hi-C mapping pipeline☆101Dec 5, 2024Updated last year
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- ☆13Sep 4, 2025Updated 6 months ago
- Buffer compression and transformation codecs☆37Feb 21, 2025Updated last year
- Python bindings to UCSC BigWig and BigBed library☆36Mar 13, 2026Updated last week
- ☆16Mar 1, 2026Updated 3 weeks ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- Simple web browser to visualize HiC tracks☆19Dec 12, 2019Updated 6 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated 11 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆109Nov 12, 2025Updated 4 months ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆207May 19, 2018Updated 7 years ago
- Red-C data processing☆15Apr 18, 2023Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21May 11, 2023Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆268Jul 17, 2025Updated 8 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆39Updated this week
- Genomic interval operations on Pandas DataFrames☆190Mar 2, 2026Updated 2 weeks ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 3 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated 11 months ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆126Feb 3, 2026Updated last month
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Apr 16, 2025Updated 11 months ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year