Builds a docker container wrapping higlass-server and higlass-client in nginx
☆34May 31, 2022Updated 4 years ago
Alternatives and similar repositories for higlass-docker
Users that are interested in higlass-docker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Sep 15, 2026Updated 3 weeks ago
- Server component for HiGlass that manages and serves tiled data☆22May 23, 2023Updated 3 years ago
- Python NGS Repository☆10Apr 22, 2026Updated 5 months ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 5 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆68May 19, 2026Updated 4 months ago
- Fast, flexible and extensible genome browser.☆343Jun 17, 2026Updated 3 months ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated 2 years ago
- The tools for your .cool's☆171Mar 19, 2026Updated 6 months ago
- A cool place to store your Hi-C☆245Updated this week
- A modular Hi-C mapping pipeline☆106Dec 5, 2024Updated last year
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Buffer compression and transformation codecs☆38Feb 21, 2025Updated last year
- Python bindings to UCSC BigWig and BigBed library☆37Sep 14, 2026Updated 3 weeks ago
- ☆17May 23, 2026Updated 4 months ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- ☆13Sep 4, 2025Updated last year
- Simple web browser to visualize HiC tracks☆19Dec 12, 2019Updated 6 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆113Nov 12, 2025Updated 10 months ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆53Jul 21, 2017Updated 9 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆214May 19, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆279Sep 24, 2026Updated 2 weeks ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆23Sep 1, 2026Updated last month
- Genomic interval operations on Pandas DataFrames☆196Sep 7, 2026Updated last month
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆41Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- ☆16Mar 16, 2017Updated 9 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated last year
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆138Jul 29, 2026Updated 2 months ago
- ☆37Aug 24, 2025Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆28Jul 23, 2026Updated 2 months ago