g2nb / igv-jupyterLinks
Extension for Jupyter which integrates igv.js
☆154Updated 2 years ago
Alternatives and similar repositories for igv-jupyter
Users that are interested in igv-jupyter are comparing it to the libraries listed below
Sorting:
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆321Updated 4 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆95Updated last year
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 7 months ago
- Example Nextflow pipelines and programming techniques☆107Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated last month
- Module for embedding igv.js in an IPython notebook☆76Updated 5 months ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 8 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- Tools for manipulating biological data, particularly multiple sequence alignments☆157Updated 10 months ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆138Updated 4 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆168Updated 8 months ago
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆189Updated this week
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- IGV Web App☆124Updated last week
- ☆178Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆251Updated 3 weeks ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- GFF and GTF file manipulation and interconversion☆301Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆153Updated this week
- Match up paired end fastq files quickly and efficiently.☆150Updated last year
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 2 weeks ago