g2nb / igv-jupyterLinks
Extension for Jupyter which integrates igv.js
☆154Updated 2 years ago
Alternatives and similar repositories for igv-jupyter
Users that are interested in igv-jupyter are comparing it to the libraries listed below
Sorting:
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆324Updated 6 months ago
- Documentation and description of AWS iGenomes S3 resource.☆116Updated 9 months ago
- Sequana: a set of Snakemake NGS pipelines☆145Updated last month
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆97Updated last year
- Example Nextflow pipelines and programming techniques☆106Updated 4 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆154Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 3 months ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆174Updated 10 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Module for embedding igv.js in an IPython notebook☆78Updated 7 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆158Updated 3 weeks ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated last month
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 11 months ago
- IGV Web App☆124Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated last month
- GFF and GTF file manipulation and interconversion☆306Updated last year
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- BEDOPS: high-performance genomic feature operations☆351Updated 4 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆339Updated 3 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last week
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆172Updated 2 weeks ago
- GFF and GVF specification documents☆214Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆247Updated 5 months ago