Alternatives and similar repositories for igv-jupyter

Users that are interested in igv-jupyter are comparing it to the libraries listed below

• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆127Updated 5 years ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆99Updated last year
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆326Updated 7 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆117Updated 10 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated last week
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆158Updated 2 weeks ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆194Updated 3 weeks ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated last month
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 4 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 8 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆247Updated last week
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆108Updated 4 years ago
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated this week
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆158Updated last month
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆80Updated 2 years ago
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆82Updated last month
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆136Updated 2 years ago
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆183Updated last week
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆176Updated 4 years ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆182Updated last month
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 4 months ago
• adamewing / bamsurgeon
  tools for adding mutations to existing .bam files, used for testing mutation callers
  ☆246Updated last year
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆308Updated last year
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆234Updated 9 months ago
• getzlab / rnaseqc
  Fast, efficient RNA-Seq metrics for quality control and process optimization
  ☆175Updated 11 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆199Updated 2 months ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆185Updated last year
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆344Updated this week