Alternatives and similar repositories for bulk-rnaseq-analysis

Users that are interested in bulk-rnaseq-analysis are comparing it to the libraries listed below

• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆132Updated last year
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆229Updated last month
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆102Updated 2 months ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆83Updated 2 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆159Updated 3 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆126Updated 5 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆160Updated 2 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆84Updated 4 months ago
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆199Updated 5 years ago
• huayc09 / SeuratExtend
  ☆196Updated 3 weeks ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆205Updated last year
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆237Updated 3 weeks ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆297Updated 2 years ago
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆130Updated 7 months ago
• harvardinformatics / ATAC-seq
  ☆145Updated 6 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• hbctraining / Intro-to-DGE
  ☆211Updated 4 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆281Updated last month
• broadinstitute / ABC-Enhancer-Gene-Prediction
  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
  ☆243Updated 6 months ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆75Updated 6 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆114Updated last week
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆113Updated 9 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• IanevskiAleksandr / sc-type
  ☆280Updated last year
• tallulandrews / scRNASeqPipeline
  ☆118Updated 7 years ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆233Updated 9 months ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆202Updated 8 months ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆112Updated 2 years ago