molgenis / NGS_DNALinks
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
☆18Updated 3 months ago
Alternatives and similar repositories for NGS_DNA
Users that are interested in NGS_DNA are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- ☆23Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Integrative analysis of structural variations.☆40Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- DriverPower☆26Updated 10 months ago
- Filter and prioritize fusion calls☆20Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- A series of scripts to automate sequence workflows☆19Updated 6 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Readme☆10Updated 5 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆24Updated last year