molgenis / NGS_DNALinks
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
☆18Updated 4 months ago
Alternatives and similar repositories for NGS_DNA
Users that are interested in NGS_DNA are comparing it to the libraries listed below
Sorting:
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- ☆23Updated 2 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- a set of NGS pipelines☆24Updated last week
- DriverPower☆26Updated 11 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- ☆24Updated last year
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Updated 3 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 6 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Updated 6 years ago