molgenis / NGS_DNALinks
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
☆18Updated last month
Alternatives and similar repositories for NGS_DNA
Users that are interested in NGS_DNA are comparing it to the libraries listed below
Sorting:
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆23Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- Readme☆10Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- a set of NGS pipelines☆24Updated last week
- DriverPower☆26Updated 8 months ago
- Integrative analysis of structural variations.☆40Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆25Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- a bucket of bioinformatics scripts☆13Updated last week
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago