NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
☆18Aug 22, 2025Updated last year
Alternatives and similar repositories for NGS_DNA
Users that are interested in NGS_DNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of notes and scripts related to NGS☆14Sep 2, 2026Updated last month
- Pipelines for NGS, imputation, gwas, ...☆30Dec 18, 2019Updated 6 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- My repo for code useful in quantitative genetics and miscellaneous scripts.☆11Feb 8, 2026Updated 8 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆20Oct 15, 2026Updated 2 weeks ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆117Feb 19, 2019Updated 7 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 7 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- Scripts and utilities for automatic processing & management of Illumina NGS sequencing data within the Bioinformatics Core Facility at th…☆10Aug 20, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Geneyx Analysis API☆11Oct 14, 2026Updated 2 weeks ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated 2 weeks ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- a set of NGS pipelines☆25Oct 16, 2026Updated 2 weeks ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated 6 months ago
- ☆16Oct 3, 2017Updated 9 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- ☆25Jul 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Collection of CGAT NGS Pipelines☆43Nov 8, 2018Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆24Sep 1, 2021Updated 5 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- Statistical Rethinking Course 2024 with Python☆10Jan 7, 2024Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of python and bash scripts for various bioinformatics-related tasks☆13Sep 19, 2024Updated 2 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 10 months ago
- ☆10May 17, 2022Updated 4 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- ☆10Mar 4, 2025Updated last year