molgenis / NGS_DNALinks
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
☆18Updated last week
Alternatives and similar repositories for NGS_DNA
Users that are interested in NGS_DNA are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- a set of NGS pipelines☆24Updated last week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- ☆23Updated 2 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Readme☆10Updated 5 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- All kinds of NGS analysis pipeline☆12Updated 5 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago