molgenis / NGS_DNALinks
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
☆18Updated 5 months ago
Alternatives and similar repositories for NGS_DNA
Users that are interested in NGS_DNA are comparing it to the libraries listed below
Sorting:
- a set of NGS pipelines☆24Updated 3 weeks ago
- Readme☆10Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- a bucket of bioinformatics scripts☆13Updated this week
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- ☆23Updated 2 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- DriverPower☆26Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- RNA-seq analysis scripts☆16Updated 3 weeks ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Aggregation and analyses of rare CNVs across diseases☆15Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- ☆23Updated 6 months ago
- ☆33Updated 3 years ago