CCDG / Pipeline-StandardizationLinks
☆82Updated 7 years ago
Alternatives and similar repositories for Pipeline-Standardization
Users that are interested in Pipeline-Standardization are comparing it to the libraries listed below
Sorting:
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Relevant papers for CNV and SV approaches☆94Updated last year
- ABRA2☆95Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 5 months ago
- The Platinum Genomes Truthset☆89Updated 8 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Copy number vaiation detection from SNP arrays☆96Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- R package designed to simplify structural variant analysis