Alternatives and similar repositories for bionitio

Users that are interested in bionitio are comparing it to the libraries listed below

• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆84Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 3 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆56Updated 2 years ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆76Updated 10 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆133Updated 2 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆98Updated 3 months ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 6 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆137Updated 3 weeks ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆150Updated 4 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆85Updated 3 weeks ago
• parklab / bamsnap
  ☆122Updated 7 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆116Updated 5 months ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆101Updated this week
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆106Updated 5 years ago
• epi2me-labs / wf-basecalling
  ☆40Updated this week
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• quinlan-lab / sllobs-biostats
  ☆71Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated 2 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆93Updated last month
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆103Updated last month
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 6 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆150Updated last year