Alternatives and similar repositories for bionitio

Users that are interested in bionitio are comparing it to the libraries listed below

• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆92Updated 5 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆79Updated last year
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 8 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆147Updated 5 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 3 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated 11 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆137Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆92Updated 3 weeks ago
• quinlan-lab / sllobs-biostats
  ☆73Updated 3 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 4 months ago
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆81Updated 2 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆100Updated last year
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated last year
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated this week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆98Updated last week
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• davetang / learning_bam_file
  Learning the Sequence Alignment/Map format
  ☆112Updated 5 months ago
• asntech / intervene
  Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
  ☆143Updated 2 years ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated 5 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 5 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated last week
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆124Updated 5 months ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated last month
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆33Updated 3 years ago
• IARCbioinfo / IARC-nf
  List of IARC bioinformatics pipelines and resources
  ☆56Updated last month
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆87Updated 2 years ago
• MikkelSchubert / adapterremoval
  AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
  ☆113Updated this week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆41Updated 5 years ago