Alternatives and similar repositories for bionitio

Users that are interested in bionitio are comparing it to the libraries listed below

• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 3 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆87Updated last week
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆78Updated 11 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆106Updated 5 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆89Updated 2 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 2 months ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆145Updated 2 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated last week
• asntech / intervene
  Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
  ☆143Updated last year
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆134Updated 2 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 5 months ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆93Updated 2 months ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 7 months ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆142Updated last week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 6 months ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated 2 years ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆66Updated this week
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆142Updated 2 months ago
• maasha / biopieces
  Biopieces is a bioinformatic framework of tools easily used and easily created.
  ☆142Updated 7 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆81Updated last week
• davetang / learning_bam_file
  Learning the Sequence Alignment/Map format
  ☆114Updated last week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 2 weeks ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆102Updated this week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year