Demonstrating best practices for bioinformatics command line tools
☆116Sep 25, 2020Updated 5 years ago
Alternatives and similar repositories for bionitio
Users that are interested in bionitio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated last month
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- ☆11Oct 6, 2020Updated 5 years ago
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Cleaning up Conda r-packages☆50Jan 6, 2026Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Mar 20, 2026Updated 3 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆174Mar 10, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆13Mar 31, 2018Updated 8 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆391Apr 4, 2026Updated 3 months ago
- ☆13Jan 23, 2020Updated 6 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 7 months ago
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 2 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Sep 15, 2023Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆70May 21, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Should you cite this software?☆33Jul 2, 2020Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 2 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC