bionitio-team / bionitioLinks
Demonstrating best practices for bioinformatics command line tools
☆116Updated 5 years ago
Alternatives and similar repositories for bionitio
Users that are interested in bionitio are comparing it to the libraries listed below
Sorting:
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆89Updated 3 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 11 months ago
- Learning the Variant Call Format☆147Updated 3 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 3 months ago
- Galaxy RNA workbench☆40Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆73Updated 3 years ago
- Learning the Sequence Alignment/Map format☆113Updated 3 months ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆143Updated 7 years ago
- BigWig and BAM utilities☆98Updated last year
- ☆83Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆84Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- A small-RNA sequencing analysis pipeline☆97Updated 5 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- Reference genome resource manager☆74Updated last year
- Example Nextflow pipelines and programming techniques☆106Updated last month
- Simple test framework for Nextflow pipelines☆173Updated 2 weeks ago
- Merging paired-end reads and removing adapters☆46Updated last week
- An interactive web-tool for RNA-seq analysis☆70Updated 8 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆93Updated last week