greenelab / phenoplierLinks
PhenoPLIER
☆13Updated last year
Alternatives and similar repositories for phenoplier
Users that are interested in phenoplier are comparing it to the libraries listed below
Sorting:
- Marker Selection by matching manifolds and elastic net☆23Updated 11 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week
- ☆20Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆15Updated 6 years ago
- Gene Expression Decomposition and Integration☆19Updated 7 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆22Updated 3 months ago
- Fast motif matching in R☆46Updated last year
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- The million-scale method for single-cell analysis☆10Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schaffli…☆22Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆37Updated 6 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ☆11Updated 5 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago