greenelab / phenoplierLinks
PhenoPLIER
☆14Updated last year
Alternatives and similar repositories for phenoplier
Users that are interested in phenoplier are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 5 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated last week
- Fast motif matching in R☆46Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆56Updated 3 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 3 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 4 years ago
- Proteome-Wide Association Study☆50Updated 4 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated 3 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆25Updated 3 years ago
- ☆36Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Updated last month
- Explore the cancer relevance of your gene list☆52Updated last week
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆17Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 8 months ago
- single-cell Nucleosome Methylation Transcription☆14Updated 7 years ago
- ☆12Updated 6 years ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago