greenelab / TDM
R package for normalizing RNA-seq data to make them comparable to microarray data.
☆37Updated last year
Alternatives and similar repositories for TDM:
Users that are interested in TDM are comparing it to the libraries listed below
- Statistical power studies for multi-omics experiments.☆30Updated 2 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 4 months ago
- ☆15Updated 4 years ago
- ☆62Updated this week
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Reactome Pathway Analysis☆40Updated 4 months ago
- Analysis for svaseq paper☆19Updated 10 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- Modelling DNA methylation profiles☆22Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated 10 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- ☆59Updated 4 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- Topics In Data Science and Bioinformatics☆78Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated last month
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- Quick access to gene synonyms☆26Updated this week
- Identify and correct invalid gene symbols☆59Updated 4 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 3 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆16Updated 11 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month