R package for normalizing RNA-seq data to make them comparable to microarray data.
☆38May 4, 2023Updated 2 years ago
Alternatives and similar repositories for TDM
Users that are interested in TDM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Mar 20, 2023Updated 3 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆51Mar 21, 2026Updated 3 weeks ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 10 months ago
- ☆13Nov 21, 2019Updated 6 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated 9 months ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆13Mar 26, 2019Updated 7 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Code for the Recount project☆11Dec 13, 2024Updated last year
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 4 months ago
- A collection of R functions to aid in host-pathogen genomic research☆12May 8, 2024Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 9 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016☆15Sep 28, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- stageR package☆13Feb 28, 2023Updated 3 years ago
- ☆11Aug 6, 2019Updated 6 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 4 months ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- YouTube kanalımızda yapmış olduğumuz videoların kod kısımlarının paylaşımı bu repository de yapılmaktadır.☆46Oct 25, 2025Updated 5 months ago
- Landscape Single Cell Entropy☆22Aug 24, 2020Updated 5 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆27Nov 2, 2021Updated 4 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Mar 31, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- several R scripts about Machine Learning that I code☆11Jun 3, 2021Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- Mouse cell atlas☆62Apr 18, 2020Updated 6 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 2 months ago
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 5 months ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆25Feb 1, 2020Updated 6 years ago
- 📊 An R package of RNA-seq workflow☆15May 4, 2022Updated 3 years ago