Course packets for Bacterial Genetics and Physiology. Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
☆67Jan 6, 2026Updated last month
Alternatives and similar repositories for Bacterial_Genetics_Course_Packet
Users that are interested in Bacterial_Genetics_Course_Packet are comparing it to the libraries listed below
Sorting:
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Nov 11, 2025Updated 3 months ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 9 months ago
- Protein orthologous group assignment with deep learning☆28Dec 16, 2025Updated 2 months ago
- A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse☆242Feb 11, 2024Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- JavaScript artefacts and deployment documents for JalviewJS☆17Jan 24, 2025Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- ☆50Jan 4, 2026Updated last month
- waka waka☆18Mar 18, 2021Updated 4 years ago
- ☆15Aug 14, 2020Updated 5 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated 2 years ago
- ☆23Jun 4, 2023Updated 2 years ago
- Teaching modules for Human Genome Variation Lab.☆20Jun 6, 2025Updated 8 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- ☆23Jan 7, 2026Updated last month
- ☆157Jun 18, 2024Updated last year
- Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023☆519Jan 14, 2026Updated last month
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆24Feb 7, 2025Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Mar 28, 2025Updated 11 months ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Apr 10, 2025Updated 10 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆24Jul 26, 2024Updated last year
- 🧬 gget enables efficient querying of genomic reference databases☆1,100Updated this week
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Jan 17, 2023Updated 3 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Aug 24, 2023Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Feb 18, 2026Updated last week