Advanced BigQuery examples on genomic data.
☆89Jun 9, 2017Updated 9 years ago
Alternatives and similar repositories for bigquery-examples
Users that are interested in bigquery-examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples of how to get started with genomics data in BigQuery in many languages.☆53Jun 9, 2017Updated 9 years ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Sep 5, 2017Updated 9 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆46Mar 15, 2023Updated 3 years ago
- Documentation for the Google Genomics cookbook.☆142May 20, 2020Updated 6 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- Genotype + Environment = Trait Evidence (GET-E) Database: help the Personal Genome Project, the clinical genetics community, and, the gen…☆26Oct 23, 2012Updated 14 years ago
- Apache Spark jobs such as Principal Coordinate Analysis.☆77Jan 30, 2017Updated 9 years ago
- GCP Variant Transforms☆147May 21, 2026Updated 5 months ago
- Identify cell types and pathways affected by genetic risk loci.☆37Feb 29, 2024Updated 2 years ago
- Sequential lm for methylation data☆10Jan 11, 2019Updated 7 years ago
- Mapping scheme test software, to be extended to sequence graphs.☆10Sep 28, 2022Updated 4 years ago
- ☆13Aug 30, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Aug 2, 2017Updated 9 years ago
- Numerical Encoding for Human Genetic Variants☆43Jun 8, 2023Updated 3 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- ☆12May 4, 2022Updated 4 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Jul 21, 2022Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48May 7, 2019Updated 7 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- A tool to identify, annotate and visualise splicing switch events from RNA-seq data☆14Aug 26, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.☆13Jan 8, 2018Updated 8 years ago
- This is *NOT* the official repository of samtools.☆49Jun 9, 2017Updated 9 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 10 years ago
- Terminal based chat implementation of ARK agent☆13Mar 12, 2026Updated 7 months ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 10 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆130Feb 13, 2020Updated 6 years ago
- Scripts and samples for using Grid Engine on Google Cloud Platform.☆13Aug 2, 2017Updated 9 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BITS: Binary Interval Search☆26Jun 30, 2026Updated 4 months ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- This project is no longer maintained.☆13Oct 11, 2012Updated 14 years ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆85Mar 22, 2026Updated 7 months ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Sep 28, 2017Updated 9 years ago