hammerlab / guacamoleLinks
Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
☆84Updated 7 years ago
Alternatives and similar repositories for guacamole
Users that are interested in guacamole are comparing it to the libraries listed below
Sorting:
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 4 months ago
- Bioinformatics for the Scala programming language☆111Updated last year
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Apache Spark jobs such as Principal Coordinate Analysis.☆75Updated 8 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14Updated 9 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- Documentation for the Google Genomics cookbook.☆142Updated 5 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Updated 6 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 9 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆218Updated 2 years ago
- GenomicsDB☆111Updated 2 years ago
- Python graph database framework for bioinformatics☆93Updated 3 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- ☆31Updated 2 weeks ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Bio4j abstract model and general entry point to the project☆118Updated 8 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 3 months ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago