BITS: Binary Interval Search
☆26Jun 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for bits
Users that are interested in bits are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83May 31, 2022Updated 4 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- ☆18Apr 10, 2015Updated 11 years ago
- kallisto index tag extractor☆19Jul 6, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Feb 24, 2017Updated 9 years ago
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Nextera Long Mate Pair analysis and processing tool☆18Mar 26, 2020Updated 6 years ago
- BEETL☆98Apr 15, 2023Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Native Julia suffix array implementation; Derived from sais☆19Apr 20, 2026Updated 3 months ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆13Dec 4, 2018Updated 7 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- Convergent and Commutative Replicated Data Types for Scala☆15Feb 9, 2014Updated 12 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 3 months ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- A Tidyverse-based workflow for local synteny visualization☆19Sep 3, 2025Updated 10 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Dec 3, 2025Updated 7 months ago
- ☆22Jul 28, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- [deprecated] P-value adjustment methods for multiple testing correction☆16Nov 25, 2016Updated 9 years ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- Genoogle is a software for fast similar DNA sequence searching. It is a full functional similar genetics searching tool, having a text mo…☆13Apr 27, 2016Updated 10 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆43Jun 17, 2024Updated 2 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago