Creating a simple Docker image to help perform comparisons for FASTQ compression
☆43Sep 22, 2026Updated last month
Alternatives and similar repositories for fastq_compression_comparison
Users that are interested in fastq_compression_comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FASTQ compression☆157Aug 26, 2026Updated 2 months ago
- IRIDA Next☆15Updated this week
- ☆12Apr 8, 2021Updated 5 years ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 27, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14May 12, 2023Updated 3 years ago
- A simple pipeline for bacterial assembly and quality control☆18Updated this week
- A fast lossless FASTQ compressor with ultra-high compression ratio☆157May 28, 2025Updated last year
- Compressor for Nanopore Sequencing Reads☆24Feb 10, 2023Updated 3 years ago
- ☆15Apr 2, 2025Updated last year
- Compression-focused fork of sylph, a fast species-level metagenomic profiler☆13Oct 15, 2026Updated 3 weeks ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 6 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆18Updated this week
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 6 months ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆191Oct 19, 2026Updated 3 weeks ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- Pathogenicity prediction and prioritization of genetic variants.☆20Sep 21, 2026Updated last month
- Tools for working with Variant Call Format files.☆11Jul 2, 2026Updated 4 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 11 months ago
- Benchmarking FASTQ compression with 'mature' compression algorithms☆44Sep 19, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆33Sep 8, 2026Updated 2 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆44Jul 16, 2026Updated 3 months ago
- Gene Ontology subgraph visualizations☆19Jan 6, 2026Updated 10 months ago
- PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its …☆11Dec 4, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated 5 months ago
- ☆18Feb 24, 2017Updated 9 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆15Nov 5, 2026Updated last week
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆68Jun 16, 2025Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆97Dec 13, 2024Updated last year
Are these results useful?