godotgildor / fastq_compression_comparisonLinks
Creating a simple Docker image to help perform comparisons for FASTQ compression
☆39Updated 2 years ago
Alternatives and similar repositories for fastq_compression_comparison
Users that are interested in fastq_compression_comparison are comparing it to the libraries listed below
Sorting:
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated 2 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆78Updated 2 months ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- ☆52Updated 4 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- python plotly Circos from VCF☆40Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- TIDDIT - structural variant calling☆78Updated last month
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Frequently used commands in bioinformatics☆58Updated last year
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- A deep learning approach to de novo variant calling in next generation sequencing data☆21Updated last week
- Experimental features for Nextflow☆47Updated last month
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- An insertion caller for Illumina paired-end WGS data.☆24Updated 5 months ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- gatk4 RNA variant calling pipeline☆59Updated last week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month