dalmatian is a collection of high-level companion functions for Firecloud and FISS.
☆20Aug 3, 2026Updated last week
Alternatives and similar repositories for dalmatian
Users that are interested in dalmatian are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 3 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆34May 19, 2026Updated 2 months ago
- ☆26Feb 15, 2018Updated 8 years ago
- Easy batch submission of adhoc jobs onto GCP☆13Jul 28, 2026Updated 2 weeks ago
- ☆30Mar 1, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BEER: Batch EffEct Remover for single-cell data☆26Jan 9, 2025Updated last year
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 6 months ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated 3 months ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 3 years ago
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated last year
- ☆80Jul 12, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 3 years ago
- ☆12Sep 25, 2024Updated last year
- TRAPPIST: Totally Rad Analysis Pipelines Python Informatics Super Tool (actually, a python-based genomics analysis toolbox)☆14Jan 25, 2018Updated 8 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13Updated this week
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NGSeminar on the use of Jupyter and R notebooks in biomedical research☆13Jan 28, 2023Updated 3 years ago
- Computational Biology- Spring 2021☆50Nov 1, 2021Updated 4 years ago
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆181Nov 2, 2024Updated last year
- ☆16Jan 24, 2023Updated 3 years ago
- epigenome analysis to rank transcription factors☆33Feb 2, 2023Updated 3 years ago
- ☆19Updated this week
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 9 years ago
- Efficient retrieval head analysis with triton flash attention that supports topK probability☆13Jun 15, 2024Updated 2 years ago
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- Single cell pipelines☆16Jun 14, 2026Updated 2 months ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago