dalmatian is a collection of high-level companion functions for Firecloud and FISS.
☆19Mar 31, 2026Updated last month
Alternatives and similar repositories for dalmatian
Users that are interested in dalmatian are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆33Apr 3, 2026Updated last month
- ☆26Feb 15, 2018Updated 8 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 2 years ago
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 3 months ago
- Molecular interactions inference from single-cell multi-omics data☆31Jan 14, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- ☆12Sep 25, 2024Updated last year
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆12Feb 25, 2026Updated 2 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆15Jul 8, 2019Updated 6 years ago
- TRAPPIST: Totally Rad Analysis Pipelines Python Informatics Super Tool (actually, a python-based genomics analysis toolbox)☆14Jan 25, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- NGSeminar on the use of Jupyter and R notebooks in biomedical research☆13Jan 28, 2023Updated 3 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- Computational Biology- Spring 2021☆49Nov 1, 2021Updated 4 years ago
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆178Nov 2, 2024Updated last year
- ☆16Jan 24, 2023Updated 3 years ago
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19Sep 1, 2025Updated 8 months ago
- Efficient retrieval head analysis with triton flash attention that supports topK probability☆13Jun 15, 2024Updated last year
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- Automate IMGT V-QUEST usage on imgt.org☆15Oct 11, 2022Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Python script to comvert Philips iSyntax files to OME-TIFF☆14Dec 30, 2022Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆20Nov 4, 2025Updated 6 months ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆43Mar 10, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A command-line font manager☆19Sep 29, 2016Updated 9 years ago
- Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge☆15Dec 10, 2015Updated 10 years ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆19Jan 18, 2026Updated 3 months ago
- Website for checking the SpliceAI, Pangolin, and other predictor scores for variant(s) of interest.☆31Apr 21, 2026Updated 2 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated last week
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated last year