broadinstitute / gtex-vizLinks
GTEx Visualizations
☆65Updated 4 years ago
Alternatives and similar repositories for gtex-viz
Users that are interested in gtex-viz are comparing it to the libraries listed below
Sorting:
- ☆72Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 4 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆110Updated 2 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆89Updated 2 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆46Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A complete tool set for molecular QTL discovery and analysis☆57Updated last year
- ☆68Updated last week
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- IDR☆30Updated 2 years ago
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- Identifying recurrent mutations in cancer☆38Updated 4 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆88Updated last month