saketkc / gencode_regionsLinks
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
☆116Updated 4 years ago
Alternatives and similar repositories for gencode_regions
Users that are interested in gencode_regions are comparing it to the libraries listed below
Sorting:
- Publication quality NGS track plotting☆117Updated 3 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147Updated 2 years ago
- release version☆58Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated 3 weeks ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- ☆157Updated 8 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆123Updated 2 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- ☆157Updated 3 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆157Updated 5 months ago
- Fast alignment and preprocessing of chromatin profiles☆211Updated 2 weeks ago
- deconstructSigs☆144Updated 2 years ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated last week
- AQUAS TF and histone ChIP-seq pipeline☆112Updated 3 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆157Updated last year