Machine learning framework to quantify pathogenicity of structural variants
☆12Dec 3, 2020Updated 5 years ago
Alternatives and similar repositories for SVFX
Users that are interested in SVFX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- Contains detailed notes, codes, answers to quizzes and exercises of all the 3 courses of the AI for Medicine specialization, by deeplearn…☆12Aug 2, 2020Updated 5 years ago
- Detecting and Classifying trash on an Edge Device☆14Apr 30, 2019Updated 6 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- A tool for simulating CNVs for WES data. It simulates rearranged genome(s), short reads (fastq) and BAM file(s) automatically in one sing…☆17Feb 21, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Jul 22, 2023Updated 2 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 3 months ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆13Apr 23, 2025Updated 11 months ago
- [NeurIPS 2025] Beyond Masked and Unmasked: Discrete Diffusion Models via Partial Masking☆29Mar 18, 2026Updated 3 weeks ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 2 months ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Sep 8, 2024Updated last year
- ☆17Dec 2, 2015Updated 10 years ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- JPEG image codec that uses SIMD instructions (MMX, SSE2, NEON, AltiVec) to accelerate baseline JPEG compression and decompression on x86,…☆11Jun 21, 2017Updated 8 years ago
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 9 months ago
- Big Data and Machine Intelligence, Spring 2021.☆12Jul 2, 2021Updated 4 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 7 months ago
- ☆25Feb 23, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Jul 22, 2019Updated 6 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.☆15Aug 7, 2019Updated 6 years ago
- Simple distribute job scheduler for multiple servers with only SSH. No additions.☆10Dec 8, 2022Updated 3 years ago
- ☆10Sep 27, 2022Updated 3 years ago