genomic relatedness detection pipeline
☆30Jan 25, 2024Updated 2 years ago
Alternatives and similar repositories for grape
Users that are interested in grape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago
- Generic SDK and CLI for GA4GH API services☆14Feb 2, 2026Updated last month
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 2 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 6, 2026Updated 2 weeks ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 2 months ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆25Mar 16, 2026Updated last week
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 10 months ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- ☆12Apr 17, 2024Updated last year
- A set of tools for modelling ancestry patterns along the genome.☆24Mar 13, 2026Updated last week
- UltimaGenomics repository for workflows compatible with AWS HealthOmics☆28Updated this week
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- Search for a set of compatible indexes for your sequencing experiment☆11Sep 6, 2019Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- ☆17Oct 18, 2024Updated last year
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 3 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Jun 14, 2023Updated 2 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆54Jun 11, 2024Updated last year
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Apr 11, 2019Updated 6 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 7 months ago
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- AncestralClust☆11Jul 9, 2025Updated 8 months ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- A crate for working with the Task Execution Service (TES) specification.☆13Jan 8, 2026Updated 2 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 8 months ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- A sparklyr extension for Hail☆15Jul 8, 2021Updated 4 years ago