Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data
☆19May 28, 2021Updated 5 years ago
Alternatives and similar repositories for Odyssey
Users that are interested in Odyssey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆35Oct 28, 2025Updated 7 months ago
- Create Hilbert curves in ggplot2☆15Dec 23, 2025Updated 5 months ago
- Fast RNAseq pipeline☆10Mar 17, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- YFull YTree☆21Apr 7, 2026Updated last month
- Imputation steps using the Michigan or Sanger imputation server.☆16May 6, 2021Updated 5 years ago
- A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.☆21Feb 23, 2026Updated 3 months ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- ☆20May 14, 2026Updated 2 weeks ago
- processing illumina SNP arrays☆19Feb 3, 2017Updated 9 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆22May 19, 2026Updated last week
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- Super small biological datasets for unit testing☆23Apr 22, 2024Updated 2 years ago
- ☆32Mar 5, 2024Updated 2 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签，训练神经网络模型；训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- genomic relatedness detection pipeline☆31Jan 25, 2024Updated 2 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆38Nov 27, 2024Updated last year
- A Carpentries-style lesson on RNA-Sequencing☆21May 1, 2023Updated 3 years ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- ☆20Jul 28, 2025Updated 10 months ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package for detecting epistasis by machine learning☆21Jun 17, 2024Updated last year
- ☆10Nov 18, 2022Updated 3 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Super spectrogram Qt cross platform!☆13Apr 4, 2017Updated 9 years ago
- python串口示波器上位机☆11Dec 10, 2021Updated 4 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- Regulatory Element Locus Intersection (RELI) Analysis☆14Jan 22, 2021Updated 5 years ago