Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data
☆19May 28, 2021Updated 5 years ago
Alternatives and similar repositories for Odyssey
Users that are interested in Odyssey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆35Oct 28, 2025Updated 9 months ago
- Create Hilbert curves in ggplot2☆15Dec 23, 2025Updated 7 months ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast RNAseq pipeline☆10Mar 17, 2023Updated 3 years ago
- processing illumina SNP arrays☆20Feb 3, 2017Updated 9 years ago
- Imputation steps using the Michigan or Sanger imputation server.☆16May 6, 2021Updated 5 years ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- ☆21May 14, 2026Updated 3 months ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 8 months ago
- ☆15Nov 9, 2018Updated 7 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Introduction to Snakemake for Bioinformatics☆22Aug 11, 2026Updated last week
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- An open source genomics data analysis package based on deep learning for auto tuning network structure and building models.☆21Oct 3, 2023Updated 2 years ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- Super small biological datasets for unit testing☆23Apr 22, 2024Updated 2 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 9 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 4 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- genomic relatedness detection pipeline☆32Jan 25, 2024Updated 2 years ago
- ☆17Sep 2, 2019Updated 6 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- A Carpentries-style lesson on RNA-Sequencing☆21May 1, 2023Updated 3 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- 🌓 Allele specific analyses across cell states and conditions☆11Nov 28, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- python串口示波器上位机☆11Dec 10, 2021Updated 4 years ago
- Super spectrogram Qt cross platform!☆13Apr 4, 2017Updated 9 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆99May 11, 2026Updated 3 months ago