Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data
☆19May 28, 2021Updated 4 years ago
Alternatives and similar repositories for Odyssey
Users that are interested in Odyssey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 7 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 8 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆34Oct 28, 2025Updated 5 months ago
- Create Hilbert curves in ggplot2☆15Dec 23, 2025Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast RNAseq pipeline☆10Mar 17, 2023Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- Imputation steps using the Michigan or Sanger imputation server.☆16May 6, 2021Updated 4 years ago
- A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.☆20Feb 23, 2026Updated last month
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- ☆20Mar 27, 2026Updated 3 weeks ago
- processing illumina SNP arrays☆19Feb 3, 2017Updated 9 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- An open source genomics data analysis package based on deep learning for auto tuning network structure and building models.☆21Oct 3, 2023Updated 2 years ago
- ☆31Mar 5, 2024Updated 2 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签，训练神经网络模型；训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- genomic relatedness detection pipeline☆31Jan 25, 2024Updated 2 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆37Nov 27, 2024Updated last year
- a jenkins build monitor plugin☆33Feb 15, 2023Updated 3 years ago
- A Carpentries-style lesson on RNA-Sequencing☆20May 1, 2023Updated 2 years ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 8 years ago
- ☆20Jul 28, 2025Updated 8 months ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- Super spectrogram Qt cross platform!☆13Apr 4, 2017Updated 9 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- python串口示波器上位机☆11Dec 10, 2021Updated 4 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago