Orion1618 / OdysseyView external linksLinks
Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data
☆19May 28, 2021Updated 4 years ago
Alternatives and similar repositories for Odyssey
Users that are interested in Odyssey are comparing it to the libraries listed below
Sorting:
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 8 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆31Oct 28, 2025Updated 3 months ago
- Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.☆38Oct 1, 2025Updated 4 months ago
- genomic relatedness detection pipeline☆30Jan 25, 2024Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Nov 10, 2021Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Jan 4, 2024Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- ☆31Mar 5, 2024Updated last year
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- python串口示波器上位机☆11Dec 10, 2021Updated 4 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆11Oct 30, 2025Updated 3 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- ☆16Jul 5, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. glinternet — Learning Interactions via Hierarchical Group-Lasso Regulariza…☆13Sep 3, 2021Updated 4 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- ☆38Feb 27, 2020Updated 5 years ago
- Harnessing FABRIC for Scalable Human Genome Sequence Analysis☆12Feb 7, 2026Updated last week
- ChIP-seq and ATAC-seq analysis☆13Jun 17, 2024Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated last year
- A deep learning framework for essential gene prediction☆12Aug 17, 2020Updated 5 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆95Dec 8, 2025Updated 2 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 3 months ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆13Aug 27, 2025Updated 5 months ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 4 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago