genome / gms
The Genome Modeling System installer
☆78Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for gms
- ☆78Updated 10 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆21Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 9 months ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆80Updated last month
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆107Updated 4 years ago
- An awk-like VCF parser☆55Updated 10 months ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆121Updated 5 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆192Updated 3 years ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆107Updated 3 years ago
- Next-Generation Sequencing(NGS) toolkits.☆44Updated 8 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- Tools for early stage alignment file processing☆93Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆132Updated last year
- An R package for inferring the subclonal architecture of tumors☆116Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆55Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆142Updated last year
- Galaxy RNA workbench☆39Updated 4 years ago
- Genomic Interactive Visualization Engine☆145Updated last year
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆122Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆110Updated 4 months ago