The Genome Modeling System installer
☆78Jul 10, 2015Updated 10 years ago
Alternatives and similar repositories for gms
Users that are interested in gms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Sep 3, 2019Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆89Mar 27, 2026Updated 2 weeks ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 9 months ago
- Genome data visualizations☆222Jan 10, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detect and visualize target mutations by scanning FastQ files directly☆158Feb 10, 2022Updated 4 years ago
- ☆26Aug 8, 2024Updated last year
- Django backend to varapp☆20Feb 9, 2017Updated 9 years ago
- ☆69Jun 21, 2022Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Jun 22, 2022Updated 3 years ago
- Toolkit for processing TAB-delimited format☆62Oct 10, 2024Updated last year
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 5 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- List of IARC bioinformatics pipelines and resources☆56Apr 2, 2026Updated last week
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Jun 26, 2020Updated 5 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 5 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 8 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- Strelka2 germline and somatic small variant caller☆393Dec 29, 2021Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Mar 15, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated last year
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Jul 6, 2022Updated 3 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- Personal Cancer Genome Reporter (PCGR)☆275Apr 1, 2026Updated last week
- Convert genetic variants to minimal representation☆23Dec 8, 2017Updated 8 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆131Feb 13, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MuTect -- Accurate and sensitive cancer mutation detection☆104Feb 13, 2023Updated 3 years ago
- web-based analysis tool for rare disease genomics☆204Updated this week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Jul 10, 2017Updated 8 years ago
- Decentralized distributed database of genomic and clinical data.☆40Aug 3, 2018Updated 7 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆204Jan 5, 2026Updated 3 months ago
- Interactive web-based genome browser.☆228Aug 28, 2019Updated 6 years ago