genome / gmsLinks
The Genome Modeling System installer
☆78Updated 10 years ago
Alternatives and similar repositories for gms
Users that are interested in gms are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆128Updated 5 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆101Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 8 years ago
- Galaxy RNA workbench☆40Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆78Updated 11 years ago
- ☆69Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- ☆63Updated 9 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆84Updated 3 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 11 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- ☆57Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Updated 6 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- ☆83Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 4 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago