varapp / varapp-backend-pyLinks
Django backend to varapp
☆20Updated 8 years ago
Alternatives and similar repositories for varapp-backend-py
Users that are interested in varapp-backend-py are comparing it to the libraries listed below
Sorting:
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Structural Variant Index☆75Updated 10 months ago
- Data and information about the Polaris study☆54Updated 5 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Variant Calling Pipeline in Cromwell/WDL☆22Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- a pileup library that embraces the huge☆43Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆68Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 6 years ago
- Simple vcf parser, based on PyVCF☆47Updated 6 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Updated 10 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago