Unsupervised Instance Segmentation in Microscopy
☆26Apr 3, 2024Updated 2 years ago
Alternatives and similar repositories for cellulus
Users that are interested in cellulus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Object Tracking with Integer Linear Equations☆38Mar 30, 2026Updated last week
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 10 months ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15Dec 5, 2025Updated 4 months ago
- Official PyTorch implementation of the TMI paper "Nucleus-aware Self-supervised Pretraining Using Unpaired Image-to-image Translation for…☆16Mar 13, 2024Updated 2 years ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆11Jul 3, 2023Updated 2 years ago
- Exploring Unsupervised Cell Recognition with Prior Self-activation Maps (MICCAI 2023)☆13Oct 27, 2023Updated 2 years ago
- [Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Can…☆20Oct 3, 2023Updated 2 years ago
- ☆18May 5, 2023Updated 2 years ago
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆89Updated this week
- This Repository is project directory of the Distance Regression and Classification Network (DRCA-Net).DRCA-net is convolutional neural ne…☆13Jan 29, 2021Updated 5 years ago
- ☆17Mar 3, 2021Updated 5 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆28Mar 11, 2025Updated last year
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- ☆19Oct 28, 2024Updated last year
- Build contrasts for models defined with formulaic☆12Updated this week
- This is the official code of the paper "Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and…☆19Jan 9, 2024Updated 2 years ago
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated last year
- ☆16Apr 5, 2024Updated 2 years ago
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- ☆32Mar 10, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆31Aug 20, 2025Updated 7 months ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆41Jul 15, 2024Updated last year
- Cell tracker designed for tracking intestinal organoids☆36Apr 3, 2026Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 6 months ago
- Block-wise task scheduling for large nD volumes.☆33Mar 17, 2026Updated 3 weeks ago
- Instance-Level Salient Object Detection, Computer Vision and Image Understanding (CVIU), 2021.☆12Apr 23, 2021Updated 4 years ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆28Feb 10, 2023Updated 3 years ago
- ☆12Jun 10, 2025Updated 10 months ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Optimize image processing workflows in napari☆17May 1, 2025Updated 11 months ago
- Cell tracking and segmentation software☆174Apr 1, 2026Updated last week
- Cookiecutter template for scverse☆90Updated this week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Mar 24, 2026Updated 2 weeks ago
- ☆22Aug 17, 2023Updated 2 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- An open and interoperable data framework for spatial omics data☆359Mar 30, 2026Updated last week