Unsupervised Instance Segmentation in Microscopy
☆27Apr 3, 2024Updated 2 years ago
Alternatives and similar repositories for cellulus
Users that are interested in cellulus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Object Tracking with Integer Linear Equations☆39Jun 22, 2026Updated last week
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated last month
- Exploring Unsupervised Cell Recognition with Prior Self-activation Maps (MICCAI 2023)☆13Oct 27, 2023Updated 2 years ago
- [Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Can…☆20Oct 3, 2023Updated 2 years ago
- ☆18May 5, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆91Jun 1, 2026Updated 3 weeks ago
- This Repository is project directory of the Distance Regression and Classification Network (DRCA-Net).DRCA-net is convolutional neural ne…☆13Jan 29, 2021Updated 5 years ago
- ☆17Mar 3, 2021Updated 5 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- Visualising data frames as funky heatmaps 📊, the Python implementation☆26Feb 6, 2025Updated last year
- ☆20Oct 28, 2024Updated last year
- Build contrasts for models defined with formulaic☆13Jun 22, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is the official code of the paper "Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and…☆20Jan 9, 2024Updated 2 years ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- ☆16Apr 5, 2024Updated 2 years ago
- ☆35Jun 11, 2026Updated 2 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Learning cell communication from spatial graphs of cells☆118Jan 15, 2024Updated 2 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆33Aug 20, 2025Updated 10 months ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆41Jul 15, 2024Updated last year
- Cell tracker designed for tracking intestinal organoids☆37Jun 19, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatically annotate cell types, consistently across samples.☆24Jun 22, 2026Updated last week
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated last month
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆29Feb 10, 2023Updated 3 years ago
- ☆12Jun 10, 2025Updated last year
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- Cell tracking and segmentation software☆178Jun 3, 2026Updated 3 weeks ago
- Cookiecutter template for scverse☆89Jun 23, 2026Updated last week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Mar 24, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Aug 17, 2023Updated 2 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- ☆34Oct 10, 2025Updated 8 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Updated this week
- An open and interoperable data framework for spatial omics data☆381Jun 24, 2026Updated last week
- The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analy…☆12Sep 7, 2023Updated 2 years ago
- Utility functions for large-scale bio-image analysis.☆64Jun 3, 2026Updated 3 weeks ago