funkelab / cellulusLinks
Unsupervised Instance Segmentation in Microscopy
☆23Updated last year
Alternatives and similar repositories for cellulus
Users that are interested in cellulus are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆24Updated 2 years ago
- Segment Anything for Histopathology☆30Updated last week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Piecewise alignment for layers of mosaics☆24Updated 2 weeks ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 10 months ago
- Python package for deep learning based image to image transformation☆53Updated last year
- Pipeline for computational pathology☆35Updated last year
- ☆32Updated 2 years ago
- ☆40Updated 3 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆94Updated 2 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- ☆167Updated last month
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆96Updated this week
- version 1 scripts for CODA☆45Updated last year
- Inference code for HoVer-NeXt☆35Updated last month
- ☆33Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 3 months ago
- Training/Evaluation code for HoVer-NeXt☆14Updated 5 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆92Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- Easy Volumetric Segmentation with Deep Learning☆26Updated 3 weeks ago
- ☆20Updated 7 months ago
- multimodal whole slide image registration in a graph structure☆85Updated 11 months ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated 4 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆70Updated 10 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- Transfer trained StarDist models across imaging modalities☆3Updated 8 months ago
- CoNIC Challenge☆63Updated last year