Alternatives and similar repositories for cellcanvas-prototype

Users that are interested in cellcanvas-prototype are comparing it to the libraries listed below

• cellcanvas / surforama
  a tool for using surfaces to explore volumetric data in napari
  ☆19Updated 5 months ago
• alisterburt / napari-mrcfile-reader
  Read MRC format image files into napari using the mrcfile package from CCP-EM
  ☆18Updated last year
• GrotjahnLab / surface_morphometrics
  Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
  ☆27Updated last month
• brisvag / napari-label-interpolator
  ☆13Updated last year
• hanjinliu / cylindra
  Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
  ☆13Updated last week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 3 months ago
• DeMarcoLab / autolamella
  autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
  ☆19Updated 3 months ago
• pydev-guide / pyrepo-copier
  Template for creating a new python repository
  ☆13Updated 3 weeks ago
• sklumpe / SerialFIB
  A Modular Platform for Streamlining Automated Cryo-FIB Workflows
  ☆25Updated 7 months ago
• pydev-guide / pydev-guide.github.io
  Guide to python package development for scientists
  ☆28Updated last week
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• volume-em / empanada-napari
  Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
  ☆24Updated 5 months ago
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆35Updated last month
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 6 months ago
• bionanopatterning / scNodes
  ☆14Updated last week
• juglab / cryoCARE_T2T
  Singularity image for cryo-CARE
  ☆35Updated 3 years ago
• teamtomo / membrain-seg
  membrane segmentation in 3D for cryo-ET
  ☆81Updated 3 months ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated last week
• betaseg / cellsketch
  ☆10Updated last year
• napari / napari-animation
  A napari plugin for making animations
  ☆90Updated 3 weeks ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆31Updated last month
• teamtomo / mdocfile
  SerialEM mdoc files as pandas dataframes
  ☆13Updated 3 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆30Updated last week
• CellArchLab / MemBrain
  ☆33Updated 2 years ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆86Updated last month
• amedyukhina / napari-filament-annotator
  Annotation of filaments and other curvilinear structures in 3D.
  ☆12Updated 2 years ago
• teamtomo / imodmodel
  IMOD model files as pandas dataframes in Python
  ☆11Updated 3 months ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆38Updated last year