georgeoshardo / SyMBacLinks
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
☆21Updated 2 weeks ago
Alternatives and similar repositories for SyMBac
Users that are interested in SyMBac are comparing it to the libraries listed below
Sorting:
- Lectures for a napari training course☆50Updated last year
- StarDist plugin for napari☆40Updated 11 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated last year
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Pydantic models for OME-NGFF☆24Updated 2 weeks ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 6 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated last week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 7 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- segmentation of rod-shaped bacteria☆15Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Gamified image segmentation quality estimation☆17Updated 3 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆40Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated this week
- ☆49Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆66Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Command-line client for Fractal☆46Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last month
- native Python dataclasses for the OME data model☆58Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 3 weeks ago
- ☆36Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago