georgeoshardo / SyMBacLinks
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
☆21Updated 4 months ago
Alternatives and similar repositories for SyMBac
Users that are interested in SyMBac are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Lectures for a napari training course☆51Updated 2 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated 10 months ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- StarDist plugin for napari☆38Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆42Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆73Updated this week
- ☆23Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Gamified image segmentation quality estimation☆18Updated 6 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 11 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated last month
- Block-wise operations for large nD volumes☆43Updated 2 weeks ago
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated this week
- ☆13Updated 6 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Command-line client for Fractal☆47Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- High quality visualization for volumetric image data☆53Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- native Python dataclasses for the OME data model☆64Updated 3 weeks ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 8 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆171Updated 6 months ago
- ☆22Updated 2 years ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated this week