georgeoshardo / SyMBacLinks
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
☆19Updated last week
Alternatives and similar repositories for SyMBac
Users that are interested in SyMBac are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- StarDist plugin for napari☆40Updated 10 months ago
- Lectures for a napari training course☆50Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated 10 months ago
- ☆22Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 10 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 8 months ago
- ☆22Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆38Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆32Updated this week
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 6 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆77Updated 7 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 4 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Pydantic models for OME-NGFF☆24Updated this week
- segmentation of rod-shaped bacteria☆15Updated 2 years ago
- ☆13Updated 2 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆65Updated last week
- Fast reconstruction of spatial networks from bioimages.☆25Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- ☆47Updated last week
- Gamified image segmentation quality estimation☆17Updated 2 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆40Updated 2 months ago
- Command-line client for Fractal☆46Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆165Updated 2 months ago