georgeoshardo / SyMBacLinks
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
☆21Updated last month
Alternatives and similar repositories for SyMBac
Users that are interested in SyMBac are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Lectures for a napari training course☆50Updated last year
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 7 months ago
- StarDist plugin for napari☆40Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- ☆49Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated 11 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated 2 weeks ago
- segmentation of rod-shaped bacteria☆15Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 8 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆166Updated 3 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 3 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last week
- Pydantic models for OME-NGFF☆24Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated last week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆66Updated 2 weeks ago
- Read Carl Zeiss image files (CZI).☆30Updated 6 months ago
- ☆22Updated 2 years ago
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Command-line client for Fractal☆46Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 9 months ago
- ☆32Updated last year
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆137Updated 2 weeks ago