georgeoshardo / SyMBacLinks
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
☆22Updated 6 months ago
Alternatives and similar repositories for SyMBac
Users that are interested in SyMBac are comparing it to the libraries listed below
Sorting:
- Lectures for a napari training course☆50Updated 2 years ago
- StarDist plugin for napari☆38Updated last year
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Updated last week
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Command-line client for Fractal☆48Updated this week
- ☆36Updated last year
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Updated 3 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆35Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- ☆24Updated 4 months ago
- segmentation of rod-shaped bacteria☆15Updated 2 years ago
- Pydantic models for OME-NGFF☆24Updated 4 months ago
- ☆51Updated 9 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Updated 3 weeks ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago