RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis
☆18May 9, 2023Updated 3 years ago
Alternatives and similar repositories for RIblast
Users that are interested in RIblast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆36May 24, 2024Updated 2 years ago
- Common Workflow Language tools and workflows by Pitagora-Network☆32Nov 8, 2022Updated 3 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Dec 5, 2024Updated last year
- An R package for easy pie charts☆17Aug 25, 2025Updated 11 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated last month
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated 2 years ago
- Python3 teaching materials for functions and modules (1 day)☆16Jul 11, 2018Updated 8 years ago
- High-performance UMI tools for NGS data analysis☆49Updated this week
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jul 12, 2026Updated last month
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differentiable RNA folding in JAX☆31Mar 25, 2025Updated last year
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆32Jun 3, 2022Updated 4 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26May 15, 2024Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- CLI utility to post files and command output to discord☆16Oct 9, 2021Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- practical course about lab methods in genome research☆23Feb 7, 2026Updated 6 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 采用开源论坛系统Flarum建设GATK中文社区,该论坛所有帖子将以markdown代码形式发帖,所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是:https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- ☆20Apr 24, 2022Updated 4 years ago
- ☆23Aug 22, 2019Updated 6 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Ultra-fast 5' and 3' demultiplexer☆31Apr 23, 2024Updated 2 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- Soccer Trajectory Prediction Competition☆16Aug 28, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆22Feb 21, 2025Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Updated this week
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Applied Python Programming for Life Scientists☆28Feb 7, 2026Updated 6 months ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- Rapid mining of RNA structure motifs from profiling data.☆14Oct 20, 2021Updated 4 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago