RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis
☆18May 9, 2023Updated 3 years ago
Alternatives and similar repositories for RIblast
Users that are interested in RIblast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆36May 24, 2024Updated 2 years ago
- Common Workflow Language tools and workflows by Pitagora-Network☆32Nov 8, 2022Updated 3 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- ☆20Dec 5, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R package for easy pie charts☆18Aug 25, 2025Updated last year
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated 3 months ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Python module to manipulate and visualize minimap2's cs tag☆11Sep 3, 2026Updated 3 weeks ago
- Python3 teaching materials for functions and modules (1 day)☆16Jul 11, 2018Updated 8 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Aug 27, 2026Updated 3 weeks ago
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- Differentiable RNA folding in JAX☆31Mar 25, 2025Updated last year
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆35Jun 3, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26May 15, 2024Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- CLI utility to post files and command output to discord☆16Oct 9, 2021Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- practical course about lab methods in genome research☆24Feb 7, 2026Updated 7 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- 采用开源论坛系统Flarum建设GATK中文社区,该论坛所有帖子将以markdown代码形式发帖,所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是:https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- ☆20Apr 24, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆23Aug 22, 2019Updated 7 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Ultra-fast 5' and 3' demultiplexer☆31Apr 23, 2024Updated 2 years ago
- Soccer Trajectory Prediction Competition☆16Aug 28, 2025Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆22Feb 21, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Aug 10, 2026Updated last month
- Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.☆40Feb 28, 2024Updated 2 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Applied Python Programming for Life Scientists☆28Feb 7, 2026Updated 7 months ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆13Mar 7, 2024Updated 2 years ago
- ☆13Oct 19, 2023Updated 2 years ago