RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis
☆18May 9, 2023Updated 2 years ago
Alternatives and similar repositories for RIblast
Users that are interested in RIblast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated last year
- Eterna100-V2 benchmarking results and scripts☆13Oct 21, 2025Updated 5 months ago
- Integer programming based prediction of RNA secondary structures with pseudoknots☆23Nov 30, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Common Workflow Language tools and workflows by Pitagora-Network☆32Nov 8, 2022Updated 3 years ago
- Differentiable RNA folding in JAX☆27Mar 25, 2025Updated last year
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- An R package for easy pie charts☆17Aug 25, 2025Updated 7 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Feb 12, 2026Updated 2 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Apr 2, 2026Updated 2 weeks ago
- Python3 teaching materials for functions and modules (1 day)☆16Jul 11, 2018Updated 7 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆30Jun 3, 2022Updated 3 years ago
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26May 15, 2024Updated last year
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- Scripts to create, manage and backup Wordpress on Podman.☆10Nov 28, 2023Updated 2 years ago
- ☆23Aug 22, 2019Updated 6 years ago
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- 采用开源论坛系统Flarum建设GATK中文社区，该论坛所有帖子将以markdown代码形式发帖，所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是：https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- ☆19Apr 24, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆21Feb 21, 2025Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆19Jul 11, 2024Updated last year
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Wrapper for "docker run" to handle systemd quirks☆13Oct 9, 2018Updated 7 years ago
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.☆40Feb 28, 2024Updated 2 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Soccer Trajectory Prediction Competition☆15Aug 28, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated last year
- PHP-FPM 7.1 on CentOS 7☆12Apr 21, 2018Updated 7 years ago
- CLI utility to post files and command output to discord☆16Oct 9, 2021Updated 4 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Apr 8, 2026Updated last week
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 2 years ago