liguowang / CrossMapLinks
CrossMap is a python program to lift over genome coordinates from one genome version to another.
☆84Updated 3 months ago
Alternatives and similar repositories for CrossMap
Users that are interested in CrossMap are comparing it to the libraries listed below
Sorting:
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆111Updated last month
- Segmented HAPlotype Estimation and Imputation Tool☆80Updated 9 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ☆69Updated last year
- Allele-specific alignment sorting☆56Updated 2 years ago
- Software for Quantifying Interspersed Repeat Expression☆56Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆115Updated 10 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆81Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- ☆73Updated last month
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- ☆59Updated 3 years ago
- Powerful statistics for VCF files☆69Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- HiC uniform processing pipeline☆59Updated last year
- Tip and tricks for BAM files☆85Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- liftover for python, made fast with cython☆89Updated 3 weeks ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Tools to work with GWAS-VCF summary statistics files☆119Updated 8 months ago
- Burden testing against public controls☆50Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 7 months ago
- Enhanced version of the FastQTL QTL mapper☆65Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆86Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago