tgac-vumc / ACELinks
Absolute Copy Number Estimation using low-coverage whole genome sequencing data
☆16Updated 2 years ago
Alternatives and similar repositories for ACE
Users that are interested in ACE are comparing it to the libraries listed below
Sorting:
- Tumor Mutational Burden☆61Updated last month
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of ca…☆11Updated last week
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- ☆35Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 6 months ago
- Define regions in the genome☆32Updated 3 years ago
- ☆23Updated 6 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆40Updated 2 weeks ago
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆36Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆25Updated last year