Absolute Copy Number Estimation using low-coverage whole genome sequencing data
☆21Oct 17, 2025Updated 10 months ago
Alternatives and similar repositories for ACE
Users that are interested in ACE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of ca…☆12Aug 29, 2025Updated last year
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆19Dec 16, 2025Updated 8 months ago
- Quantifying copy number signatures from absolute copy number profiles☆29Jul 23, 2025Updated last year
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆17Nov 5, 2025Updated 9 months ago
- QDNAseq package for Bioconductor☆56Jul 27, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Nov 24, 2025Updated 9 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆38Sep 16, 2025Updated 11 months ago
- ☆57Jan 11, 2023Updated 3 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆17May 23, 2023Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆116Jul 1, 2026Updated 2 months ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆44Jun 10, 2016Updated 10 years ago
- Fragmentase Artifact Detection and Elimination☆13Mar 22, 2022Updated 4 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- ☆17Jan 9, 2023Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 8 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Jul 24, 2026Updated last month
- Make coverage plots from bam files!☆16Mar 17, 2026Updated 5 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13May 15, 2024Updated 2 years ago
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆25Nov 23, 2025Updated 9 months ago
- Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data☆10Jul 2, 2026Updated 2 months ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- Thousand Variant Callers Project Repository☆74Oct 17, 2019Updated 6 years ago
- GLASS consortium☆42Aug 7, 2026Updated 3 weeks ago
- MuRaL is a deep learning framework for building base-resolution mutation rate maps.☆21May 19, 2026Updated 3 months ago
- ☆18Jul 13, 2021Updated 5 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- ☆16Sep 13, 2024Updated last year
- ☆22Jul 2, 2020Updated 6 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated 2 months ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 3 months ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago