Alternatives and similar repositories for r-crash-course:

Users that are interested in r-crash-course are comparing it to the libraries listed below

• microbiome / mia
  Microbiome analysis
  ☆51Updated this week
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆76Updated last week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated last month
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated 6 months ago
• lfresard / blood_rnaseq_rare_disease_paper
  ☆29Updated 5 years ago
• griffithlab / rnaseq_tutorial_wiki
  The wiki repo, with pull request enabled, for the rnaseq_tutorial
  ☆26Updated 4 years ago
• hbc / bcbioRNASeq
  R package for bcbio RNA-seq analysis.
  ☆62Updated 7 months ago
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆53Updated 4 years ago
• raynamharris / Shell_Intro_for_Bioinformatics_STG
  Intro to Shell for Bioinformatics - with STG examples
  ☆28Updated 8 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆138Updated last year
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆59Updated 4 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated 2 months ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆41Updated 7 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• nickhir / GermlineMutationCalling
  An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…
  ☆11Updated 3 years ago
• biostars / biostar-handbook
  Issue tracker for the Biostar Handbook
  ☆62Updated 2 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 6 months ago
• kevinblighe / ClinicalGradeDNAseq
  Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…
  ☆26Updated 5 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆25Updated 6 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• RamRS / biostar-mod-templates
  Moderator Templates for https://www.biostars.org/
  ☆11Updated 4 years ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated last year
• ngs-docs / 2017-ucsc-metagenomics
  Workshop materials for shotgun metagenomics
  ☆36Updated 7 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 2 months ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• gatk-workflows / gatk3-4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
  ☆51Updated 5 years ago
• sschmeier / genomics
  Sphinx documentation source for a computational genomics tutorial.
  ☆33Updated 4 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year