Alternatives and similar repositories for course_RNA-seq2019

Users that are interested in course_RNA-seq2019 are comparing it to the libraries listed below

• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated 2 months ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆37Updated 3 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• gxiaolab / mountainClimber
  ☆20Updated 6 years ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆29Updated 10 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆25Updated 3 years ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 4 years ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 2 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• KirstLab / asc_seurat
  ☆24Updated last year
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated last year
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆36Updated last week
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 3 years ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆43Updated last month
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆37Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• YosefLab / ImpulseDE2
  ☆41Updated 3 years ago
• friedue / Notes
  Personal notes about work- and coding-related topics
  ☆21Updated 2 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 7 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• fmicompbio / adv_scrnaseq_2020
  Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
  ☆17Updated 5 years ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆29Updated 2 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago