friedue / course_RNA-seq2019Links
☆36Updated 4 years ago
Alternatives and similar repositories for course_RNA-seq2019
Users that are interested in course_RNA-seq2019 are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 4 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆38Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Workshop • Analysis of RNA-seq data☆37Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆20Updated 6 years ago
- ☆16Updated 8 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 4 years ago
- ☆23Updated last year
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Explore and download data from the recount3 project☆37Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆23Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- RAGE-seq scripts☆18Updated 4 years ago
- A single cell sequencing read simulator.☆34Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ☆38Updated 4 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- Single-CELL rna-seq analysis software☆39Updated 8 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Fast motif matching in R☆46Updated 2 years ago
- Cellsnake tool main repo☆36Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago