shenwei356 / go4bioLinks
Golang for Bioinformatics
☆31Updated 9 years ago
Alternatives and similar repositories for go4bio
Users that are interested in go4bio are comparing it to the libraries listed below
Sorting:
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago
- BigWig and BAM utilities☆97Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- ☆51Updated 6 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- A Snakefile to parallelize bwa.☆13Updated 11 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 3 weeks ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated last year
- Evolutionary Transcriptomics with R☆45Updated 3 weeks ago