flo-compbio / pyaffy
pyAffy: Processing raw data from Affymetrix expression microarrays in Python.
☆17Updated 8 years ago
Alternatives and similar repositories for pyaffy:
Users that are interested in pyaffy are comparing it to the libraries listed below
- Python interface to amino acid properties and IEDB☆55Updated 4 months ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- A client for the Ensembl REST API written in the Python programming language☆26Updated 2 months ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Python biomart API☆65Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Python package to plot sequence logos☆29Updated last year
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Updated 5 months ago
- Align sequences and then parse features.☆17Updated 5 months ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 7 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 9 months ago
- Python module to analyse CRISPR-based libraries☆11Updated 3 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆21Updated 3 weeks ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Position-wise analysis of sequencing and genomics data☆38Updated last year
- Library for manipulating genomic variants and predicting their effects☆83Updated 7 months ago
- DRUGZ software☆23Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated 3 weeks ago
- ☆13Updated 6 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 7 years ago
- Downloader for ENCODE☆31Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago