Alternatives and similar repositories for pyaffy

Users that are interested in pyaffy are comparing it to the libraries listed below

• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 5 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆52Updated 2 years ago
• openvax / vaxrank
  Ranked vaccine peptides for personalized cancer immunotherapy
  ☆60Updated this week
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆52Updated 6 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 6 years ago
• FRED-2 / Fred2
  Python-based framework for computational immunomics
  ☆40Updated 4 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆34Updated 8 years ago
• bhklab / PharmacoDB
  Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
  ☆47Updated 7 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 6 years ago
• mhorlbeck / CRISPRiaDesign
  ☆38Updated 7 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆31Updated 8 years ago
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆89Updated 4 months ago
• mikessh / migmap
  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  ☆53Updated last year
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 3 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 8 months ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 5 years ago
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆25Updated 4 years ago
• VCCRI / Falco
  A quick and flexible single-cell RNA-seq processing framework on the cloud
  ☆39Updated 6 years ago
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆47Updated 2 years ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆125Updated 11 months ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago