Alternatives and similar repositories for BETS

Users that are interested in BETS are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆61Updated 4 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆46Updated 5 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 5 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆46Updated 3 weeks ago
• youlab / pattern_prediction_NN_Shangying
  Use LSTM neural network for 1D distributional data prediction
  ☆22Updated 3 years ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated 2 years ago
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆38Updated 4 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated 2 years ago
• idc9 / py_jive
  A data analysis package for high-dimensional, multi-block data.
  ☆12Updated 3 years ago
• suinleelab / DeepProfile
  DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression sa…
  ☆19Updated 7 years ago
• dkobak / tsne-umap-init
  Initialization is critical for preserving global data structure in both t-SNE and UMAP
  ☆24Updated 4 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆57Updated last year
• mstrazar / iONMF
  Integrative orthogonal non-negative matrix factorization
  ☆32Updated 6 years ago
• cran / SNFtool
   This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion
  ☆23Updated 4 years ago
• divyanshu-talwar / AutoImpute
  AutoImpute : Autoencoder based imputation of single cell RNA-seq data
  ☆28Updated 5 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆42Updated 2 years ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆38Updated 3 years ago
• quon-titative-biology / siVAE
  ☆14Updated 6 months ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• abidlabs / contrastive
  Contrastive PCA
  ☆231Updated 3 months ago
• eugenelin1 / DRA
  ☆17Updated 5 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆65Updated last year
• kasparmartens / BasisVAE
  PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders
  ☆42Updated 5 years ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆130Updated last year
• scottyler89 / umap_tsne_experiment
  Testing if UMAP/tSNE overfit their intrinsic dimensionality
  ☆16Updated 2 years ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆104Updated 2 months ago
• andrewcharlesjones / pcpca
  Probabilistic contrastive principal component analysis (PCPCA)
  ☆24Updated 4 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆61Updated last year
• tjiagoM / gtex-transcriptome-modelling
  Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
  ☆11Updated 4 years ago