hidelab / diffcoexpLinks
Differential coexpression analysis
☆16Updated 2 years ago
Alternatives and similar repositories for diffcoexp
Users that are interested in diffcoexp are comparing it to the libraries listed below
Sorting:
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- ☆72Updated 2 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- ☆50Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆38Updated 4 years ago
- ☆10Updated 5 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 8 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆52Updated last week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- ☆31Updated 7 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 7 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago