jeremymcrae / liftoverLinks
liftover for python, made fast with cython
☆93Updated last month
Alternatives and similar repositories for liftover
Users that are interested in liftover are comparing it to the libraries listed below
Sorting:
- Extract 3D contacts (.pairs) from sequencing alignments☆119Updated last month
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated last month
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated last week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Publication quality NGS track plotting☆116Updated 2 months ago
- Module for embedding igv.js in an IPython notebook☆80Updated 10 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- ☆53Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- ☆60Updated 4 months ago
- Tools to work with GWAS-VCF summary statistics files☆126Updated 3 months ago
- ☆49Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- Pangolin is a deep-learning method for predicting splice site strengths.☆82Updated last year
- HiC uniform processing pipeline☆62Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- Ultraperformant reimplementation of SICER☆58Updated last week
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆153Updated 4 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year