Alternatives and similar repositories for EmbedSOM

Users that are interested in EmbedSOM are comparing it to the libraries listed below

• dphansti / CORAL
  ☆29Updated 3 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆29Updated 3 years ago
• dmis-lab / moable
  Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding
  ☆14Updated last year
• pauca / RRDKit
  A pragmatic interface to RDKit in R
  ☆25Updated 6 years ago
• nanxstats / Rcpi
  💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
  ☆37Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆19Updated 5 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆27Updated 7 months ago
• ChengF-Lab / 2019-nCoV
  Network-based Drug Repurposing for Human Coronavirus
  ☆40Updated 5 years ago
• tommyhuangthu / SSIPe
  EvoEF + evolutionary profile for ddG_bind prediction
  ☆14Updated 2 years ago
• nanxstats / protr
  🧬 Toolkit for generating various numerical features of protein sequences
  ☆53Updated 3 weeks ago
• WesleyyC / Amino-Acid-Embedding
  Train an Amino Acid Embeddings (or a dragon?)
  ☆17Updated 8 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 7 years ago
• jrash / chemmodlab
  chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models
  ☆17Updated 2 years ago
• SchubertLab / epytope
  ☆21Updated 5 months ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆28Updated 2 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆46Updated last year
• Novartis / AEGIS
  MHC-II presentation predictor
  ☆12Updated 2 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• GreiffLab / immuneSIM
  ☆38Updated last year
• GregorLueg / bixverse
  An R package that provides Rust-based interfaces into your favourite bioinformatics, computational biology methods
  ☆29Updated this week
• MolBIFFM / PTGLtools
  The Visualization of Protein-Ligand Graphs software that powers the PTGL
  ☆15Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆51Updated 6 years ago
• ODonnell-Lipidomics / LipidFinder
  LipidFinder: A computational workflow for discovery of new lipid molecular species
  ☆20Updated 4 years ago
• kusterlab / curve_curator
  Analysis platform for large-scale dose-dependent data
  ☆25Updated 3 weeks ago
• labsyspharm / smallmoleculesuite-old
  ☆14Updated 2 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 3 years ago
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆46Updated last month
• siheming / mspypeline
  Package to analyze Mass Spec Data
  ☆12Updated 2 years ago