Alternatives and similar repositories for EmbedSOM

Users that are interested in EmbedSOM are comparing it to the libraries listed below

• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 3 months ago
• nanxstats / Rcpi
  💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
  ☆37Updated 8 months ago
• dmis-lab / moable
  Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding
  ☆14Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• SchubertLab / epytope
  ☆19Updated 2 months ago
• BZdrazil / Moving_Targets
  Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Tren…
  ☆9Updated 4 years ago
• pauca / RRDKit
  A pragmatic interface to RDKit in R
  ☆25Updated 5 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 2 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 6 years ago
• liulab-dfci / MAPD
  Model-based Analysis of Protein Degradability
  ☆10Updated 3 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆27Updated 2 years ago
• jaak-s / macau
  Bayesian Factorization with Side Information in C++ with Python wrapper
  ☆41Updated 3 years ago
• nanxstats / protr
  🧬 Toolkit for generating various numerical features of protein sequences
  ☆52Updated 8 months ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆25Updated last year
• dphansti / CORAL
  ☆28Updated 3 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆27Updated last year
• kgayvert / PrOCTOR
  A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials
  ☆18Updated 5 years ago
• jrash / chemmodlab
  chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models
  ☆17Updated 2 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• siheming / mspypeline
  Package to analyze Mass Spec Data
  ☆12Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 3 weeks ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 3 years ago
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• labsyspharm / smallmoleculesuite-old
  ☆14Updated last year
• yangkky / gpmodel
  Functions and classes for doing Gaussian process models of proteins
  ☆11Updated 7 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• BobSchiffrin / PyXlinkViewer
  This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2
  ☆10Updated last year