ecocyc / PythonCycLinks
☆24Updated 11 months ago
Alternatives and similar repositories for PythonCyc
Users that are interested in PythonCyc are comparing it to the libraries listed below
Sorting:
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆45Updated 3 weeks ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 7 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- Python package to study microbial communities using metabolic modeling.☆107Updated last week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- ☆22Updated 5 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Python package for building and analyzing models using ModelSEED☆23Updated 5 months ago
- ☆39Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- ReFramed: metabolic modeling package☆60Updated this week
- Nanopore Plasmid Sequencing☆33Updated last year
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Find common blocks and differences between DNA sequences☆41Updated 5 months ago
- Python bindings for the TaxonKit library☆40Updated 2 months ago
- ☆19Updated 3 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 5 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- A package to annotate protein sequences☆59Updated 6 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆28Updated 6 years ago
- Python library to visualize circular plasmid maps☆26Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 7 months ago
- PHANOTATE: a gene caller for phages.☆77Updated 9 months ago