☆24Oct 11, 2024Updated 2 years ago
Alternatives and similar repositories for PythonCyc
Users that are interested in PythonCyc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 15, 2023Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 4 years ago
- Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.☆14Sep 28, 2026Updated last month
- ☆23Aug 28, 2020Updated 6 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Jul 23, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- source code of passatuto by Kerstin Scheubert☆10Jan 20, 2017Updated 9 years ago
- A Catlab-compatible implementation of acsets in python.☆12Jan 22, 2024Updated 2 years ago
- Official Repository for ZipStrain python package☆14Oct 23, 2026Updated last week
- A modular compiler for biological chemical reaction networks☆55Sep 27, 2026Updated last month
- kmer-based software for detecting bacterial strain genomes inside metagenomes☆12Dec 11, 2024Updated last year
- ☆13Jan 28, 2024Updated 2 years ago
- GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)☆14Jun 29, 2026Updated 4 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- data processing for MS-based metabolomics☆15May 28, 2026Updated 5 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Mar 8, 2023Updated 3 years ago
- Searching large collections of sequencing data with genome-scale queries☆23Updated this week
- ☆16Aug 30, 2024Updated 2 years ago
- Boolean Network Explorer☆14Sep 24, 2026Updated last month
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 10 months ago
- Apply AI-based trait prediction from BacDive to your own genomes.☆16Nov 12, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Feb 7, 2018Updated 8 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆29Aug 3, 2026Updated 2 months ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 11 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆15May 19, 2026Updated 5 months ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)☆11May 27, 2022Updated 4 years ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Random snippets based on tensorflow☆10Jan 22, 2016Updated 10 years ago
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 7 years ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated 3 months ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- LipidFinder: A computational workflow for discovery of new lipid molecular species☆22Feb 14, 2021Updated 5 years ago