ecocyc / PythonCycLinks
☆24Updated 8 months ago
Alternatives and similar repositories for PythonCyc
Users that are interested in PythonCyc are comparing it to the libraries listed below
Sorting:
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- ☆38Updated 2 weeks ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆63Updated 4 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆54Updated 2 months ago
- PHANOTATE: a gene caller for phages.☆77Updated 6 months ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆21Updated 4 years ago
- A package to annotate protein sequences☆58Updated 4 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 3 weeks ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆21Updated last week
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆42Updated 6 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Python package for building and analyzing models using ModelSEED☆23Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated 2 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 7 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated last year
- ☆16Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Updated last year
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 9 months ago
- ReFramed: metabolic modeling package☆59Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Python package to study microbial communities using metabolic modeling.☆103Updated 2 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year