Alternatives and similar repositories for E-MTAB-6141

Users that are interested in E-MTAB-6141 are comparing it to the libraries listed below

• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆192Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated last week
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆116Updated 10 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 5 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 7 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆62Updated last year
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆96Updated 3 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆87Updated 8 months ago
• hbctraining / main
  ☆55Updated this week
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆133Updated last month
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆95Updated 9 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆68Updated last year
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆246Updated this week
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆73Updated 3 months ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆158Updated 10 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated this week
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆113Updated this week
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆106Updated this week
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆89Updated 5 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆164Updated 8 months ago
• boulderrinnlab / CLASS_2023
  ☆20Updated 2 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆153Updated 9 months ago
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆112Updated this week
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆178Updated last year
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆182Updated 4 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆102Updated 2 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆205Updated last year
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆78Updated last year