Alternatives and similar repositories for bioinformatics_tool_recommendation

Users that are interested in bioinformatics_tool_recommendation are comparing it to the libraries listed below

• xia-lab / Seq2Fun
  ☆17Updated 6 months ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆43Updated 9 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆45Updated last month
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 7 months ago
• gtonkinhill / TCGA_analysis
  ☆26Updated 2 years ago
• JEFworks-Lab / scatterbar
  Scatterbar - data visualization for proportional data across many spatially resolved coordinates
  ☆11Updated 10 months ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆33Updated 2 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆25Updated 2 months ago
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆36Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆36Updated 3 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆24Updated 2 years ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 8 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆17Updated last week
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆57Updated 2 years ago
• pachterlab / qcbc
  ☆20Updated 8 months ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Updated last year
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 8 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆17Updated 5 years ago
• mattheiter / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆29Updated 6 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆35Updated 2 months ago