Alternatives and similar repositories for bioinformatics_tool_recommendation:

Users that are interested in bioinformatics_tool_recommendation are comparing it to the libraries listed below

• xia-lab / Seq2Fun
  ☆16Updated last year
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 8 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆21Updated 6 months ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆55Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 8 months ago
• 123xiaochen / VCFshiny
  ☆29Updated 6 months ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated last year
• blekhmanlab / MicroBioMap
  R package for fetching and parsing data of the Human Microbiome Compendium
  ☆10Updated 3 months ago
• cran / chromoMap
   This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data
  ☆9Updated 3 years ago
• lconde-ucl / DGE
  Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
  ☆12Updated 11 months ago
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 6 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated last year
• snu-cdrc / gencube
  Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
  ☆15Updated last week
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 11 months ago
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated this week
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated last month
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated last week
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated last month
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 5 months ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated 9 months ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆35Updated 3 weeks ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year