ryangreenj / bioinformatics_tool_recommendation
☆18Updated last year
Related projects ⓘ
Alternatives and complementary repositories for bioinformatics_tool_recommendation
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- ☆16Updated 7 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆54Updated last year
- ☆31Updated 10 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆19Updated 3 weeks ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- ☆30Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆21Updated last month
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆21Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆12Updated 5 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- ☆11Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆11Updated 3 weeks ago
- ☆15Updated last month
- A command line tool to compute mapping statistics from a BAM file☆22Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆12Updated last month
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆29Updated last year
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 7 months ago
- ☆26Updated last month
- interactive plots for differential expression analysis☆25Updated 2 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- FunctionaL Omics Processing platform☆13Updated 3 months ago
- Metagenome analysis using the Kraken software suite☆29Updated 2 years ago
- Implementation of Krona to QIIME2☆14Updated 8 months ago