MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep learning library Keras and Theano backend (the Keras2.0 and Tensorflow backend implementation were also provided under folder MusiteDeep_Keras2.0). At present, MusiteDeep only provides prediction of human phosphor…
☆50Aug 5, 2025Updated last year
Alternatives and similar repositories for MusiteDeep
Users that are interested in MusiteDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Mar 16, 2019Updated 7 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Nov 20, 2019Updated 6 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆36Dec 5, 2020Updated 5 years ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 4 years ago
- The first multimodal QA dataset specifically designed for evaluating large TCM language models.☆23Oct 24, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆32Oct 6, 2022Updated 3 years ago
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 5 years ago
- ☆60Jul 5, 2017Updated 9 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- This is the official repository of Prot2Token paper.☆39Jun 6, 2025Updated last year
- Variational autoencoder implementation in tensorflow following the classic paper by Kingma and Welling.☆13Jul 12, 2017Updated 9 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- research the 2019-nCov and design the inhibitors with AI☆14Jun 6, 2022Updated 4 years ago
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 6 years ago
- Deep learning protein-protein binding sites prediction☆23Feb 2, 2023Updated 3 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- ☆12Dec 12, 2018Updated 7 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 6 years ago
- R package for functionally scoring phosphorylation sites☆22Nov 3, 2019Updated 6 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- ☆18Oct 31, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆76Aug 27, 2026Updated last week
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆49Mar 24, 2023Updated 3 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- Python code to extract features from Protein sequences for Machine Learning/Deep Learning☆21Mar 26, 2022Updated 4 years ago
- command-line and python interface to the uniprot database☆10Jun 11, 2015Updated 11 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆16Jul 28, 2026Updated last month
- ☆11Mar 28, 2024Updated 2 years ago
- ☆59Aug 19, 2026Updated 2 weeks ago
- A C, C++, Python project focusing on Docking analysis, Source code, Blogs, Data availability, References.☆28Aug 17, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Mar 25, 2016Updated 10 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- Coarse-grained molecular dynamics for protein physics☆49Sep 15, 2017Updated 8 years ago
- Dilated DenseNets☆15Dec 30, 2017Updated 8 years ago
- Random effects neural networks with Edward and Keras☆14Jun 16, 2017Updated 9 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago