MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep learning library Keras and Theano backend (the Keras2.0 and Tensorflow backend implementation were also provided under folder MusiteDeep_Keras2.0). At present, MusiteDeep only provides prediction of human phosphor…
☆49Aug 5, 2025Updated 8 months ago
Alternatives and similar repositories for MusiteDeep
Users that are interested in MusiteDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Mar 16, 2019Updated 7 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Nov 20, 2019Updated 6 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆36Dec 5, 2020Updated 5 years ago
- DeepDom is an ab-initio method for protein domain boundary prediction☆16Sep 5, 2022Updated 3 years ago
- scBSP is a specialized package designed for processing biological data, specifically in the analysis of gene expression and cell coordina…☆22Mar 22, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Sep 2, 2025Updated 7 months ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics☆14Sep 13, 2022Updated 3 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆31Oct 6, 2022Updated 3 years ago
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 4 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆13Nov 18, 2022Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- ☆13Dec 5, 2024Updated last year
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- 3D hotspot mutation proximity analysis tool☆53Mar 31, 2023Updated 3 years ago
- Variational autoencoder implementation in tensorflow following the classic paper by Kingma and Welling.☆13Jul 12, 2017Updated 8 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- ☆26May 16, 2023Updated 2 years ago
- A Variational LSTM to generate rap music (with and without text input)☆11Jan 2, 2017Updated 9 years ago
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 5 years ago
- Deep learning protein-protein binding sites prediction☆22Feb 2, 2023Updated 3 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Dec 12, 2018Updated 7 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 5 years ago
- R package for functionally scoring phosphorylation sites☆23Nov 3, 2019Updated 6 years ago
- Introduction to data driven life sciences☆21Jul 7, 2025Updated 9 months ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- notes structured as org-mode, Markdown, or LaTeX files☆10May 25, 2018Updated 7 years ago
- ☆18Oct 31, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A modular framework for image processing and analysis, aimed at the biological sciences☆13Oct 16, 2013Updated 12 years ago
- Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes☆47May 21, 2020Updated 5 years ago
- ☆11Mar 28, 2024Updated 2 years ago
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆48Mar 24, 2023Updated 3 years ago
- iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide …☆196May 23, 2022Updated 3 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- Python code to extract features from Protein sequences for Machine Learning/Deep Learning☆20Mar 26, 2022Updated 4 years ago